miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 3' -43.8 NC_002169.1 + 10326 0.67 0.999991
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- uuauCAUGUGCU--------AGAAACGaaAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10520 0.7 0.99967
Target:  5'- -----cACaACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuaucaUG-UGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 10709 0.94 0.264695
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGuGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10711 0.71 0.999159
Target:  5'- -uUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- uuAUCAUGUGcUAgAAACGAA----------AGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10817 0.97 0.175492
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- uuAUCAUGUGCUAgAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10902 1.02 0.087508
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10937 1.04 0.07319
Target:  5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11010 0.89 0.415941
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 11036 0.94 0.264695
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGuGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11127 0.9 0.406257
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11173 0.94 0.257749
Target:  5'- ----aUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11230 1.02 0.09014
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11286 0.67 0.999982
Target:  5'- ----aUACACaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuaucAUGUGcUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 11361 0.88 0.498134
Target:  5'- ----aUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11440 1.08 0.041254
Target:  5'- gAAUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -UUAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11479 1.1 0.032327
Target:  5'- cAAUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -UUAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11559 0.68 0.999975
Target:  5'- -----aACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- uuaucaUGUGcUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11570 0.83 0.744685
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGuGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 11636 0.8 0.862184
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAgAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 11765 0.92 0.309577
Target:  5'- uAUAaUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uUAUcAUGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.