miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 3' -43.8 NC_002169.1 + 11479 1.1 0.032327
Target:  5'- cAAUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -UUAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11440 1.08 0.041254
Target:  5'- gAAUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -UUAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105398 1.07 0.051013
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 42193 1.06 0.055853
Target:  5'- uAUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uUAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 120039 1.05 0.066902
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 119420 1.05 0.066902
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 119602 1.04 0.071034
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10937 1.04 0.07319
Target:  5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 119794 1.04 0.07319
Target:  5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10902 1.02 0.087508
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11230 1.02 0.09014
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105501 1.02 0.092847
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 52784 1.02 0.092847
Target:  5'- --cGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 52857 1 0.117439
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 71829 1 0.117439
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 53123 1 0.12091
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 104956 0.98 0.156695
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 53315 0.98 0.156695
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10817 0.97 0.175492
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- uuAUCAUGUGCUAgAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105287 0.95 0.213237
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.