Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8488 | 3' | -43.8 | NC_002169.1 | + | 53042 | 0.89 | 0.425764 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 11036 | 0.94 | 0.264695 |
Target: 5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuAUCAUGuGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 105093 | 0.94 | 0.264695 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 42187 | 0.92 | 0.334105 |
Target: 5'- uGUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uUAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 71637 | 0.91 | 0.351233 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuaUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 41999 | 0.9 | 0.396716 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCaUCu -3' miRNA: 3'- uuaUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 104769 | 0.9 | 0.406257 |
Target: 5'- ----aUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 42257 | 0.89 | 0.415941 |
Target: 5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 104835 | 0.89 | 0.415941 |
Target: 5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 10709 | 0.94 | 0.264695 |
Target: 5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuAUCAUGuGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 11173 | 0.94 | 0.257749 |
Target: 5'- ----aUGCACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 10817 | 0.97 | 0.175492 |
Target: 5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3' miRNA: 3'- uuAUCAUGUGCUAgAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 119420 | 1.05 | 0.066902 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 120039 | 1.05 | 0.066902 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 119602 | 1.04 | 0.071034 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 10937 | 1.04 | 0.07319 |
Target: 5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 52784 | 1.02 | 0.092847 |
Target: 5'- --cGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 105501 | 1.02 | 0.092847 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 53123 | 1 | 0.12091 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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8488 | 3' | -43.8 | NC_002169.1 | + | 104956 | 0.98 | 0.156695 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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