miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 3' -43.8 NC_002169.1 + 129653 0.69 0.999849
Target:  5'- cGAUGGUgcACACGAUCUcgucGCgUUCGUUc -3'
miRNA:   3'- -UUAUCA--UGUGCUAGAaa--CGaAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 120234 0.95 0.225237
Target:  5'- uGUAaUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uUAUcAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 120039 1.05 0.066902
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 119794 1.04 0.07319
Target:  5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 119614 0.89 0.415941
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 119602 1.04 0.071034
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 119516 0.9 0.406257
Target:  5'- -uUAGUACACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 119420 1.05 0.066902
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 119325 0.83 0.733801
Target:  5'- ----aUAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucAUgUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105694 0.81 0.835613
Target:  5'- uGUAaUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- uUAUcAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 105600 0.8 0.844714
Target:  5'- ----aUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuaucAUGUGcUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105501 1.02 0.092847
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105412 0.79 0.901211
Target:  5'- ----aUACACGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 105398 1.07 0.051013
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105322 0.79 0.886433
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGcUAgAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105287 0.95 0.213237
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAg -5'
8488 3' -43.8 NC_002169.1 + 105207 0.87 0.530808
Target:  5'- ----aUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105145 0.74 0.986538
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuaucaUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 105093 0.94 0.264695
Target:  5'- -uUAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 105026 0.81 0.835613
Target:  5'- ----cUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucAUGuGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.