miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8488 3' -43.8 NC_002169.1 + 11636 0.8 0.862184
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAgAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 119794 1.04 0.07319
Target:  5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 42063 0.94 0.257749
Target:  5'- -uUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGuGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 42453 0.78 0.91483
Target:  5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCA---UGUGcUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 52857 1 0.117439
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 42193 1.06 0.055853
Target:  5'- uAUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uUAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 10902 1.02 0.087508
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 42378 0.76 0.968763
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucaUGUGcUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105145 0.74 0.986538
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuaucaUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 52976 0.8 0.853574
Target:  5'- -uUAGUACACcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGcUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 11010 0.89 0.415941
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 105501 1.02 0.092847
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 52900 0.75 0.980251
Target:  5'- -uUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- uuAUCAUGUGcUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 105412 0.79 0.901211
Target:  5'- ----aUACACGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 105322 0.79 0.886433
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- uuaUCAUGUGcUAgAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 41873 0.81 0.826282
Target:  5'- ----aUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuaucAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 41772 0.81 0.81673
Target:  5'- ----aUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuaucAUGuGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 11036 0.94 0.264695
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uuAUCAUGuGCUAGAAACGAAAGCAG- -5'
8488 3' -43.8 NC_002169.1 + 105093 0.94 0.264695
Target:  5'- -uUAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uuAUCAUGUGCUAGAAACGAAAGcAG- -5'
8488 3' -43.8 NC_002169.1 + 42187 0.92 0.334105
Target:  5'- uGUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uUAUCAUGUGCUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.