Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8489 | 3' | -41.6 | NC_002169.1 | + | 71637 | 0.78 | 0.984931 |
Target: 5'- --cAGUACAcGAUcUUUGCUUUCAUCg -3' miRNA: 3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 53315 | 0.85 | 0.803919 |
Target: 5'- --cAGUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 53233 | 0.74 | 0.998808 |
Target: 5'- ----aUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agaucAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 53123 | 0.87 | 0.706753 |
Target: 5'- --cAGUACAUGAUcUUUGCUUUCGUCg -3' miRNA: 3'- agaUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 53040 | 1 | 0.200327 |
Target: 5'- uUCUAGUACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 52978 | 0.75 | 0.997811 |
Target: 5'- uUUUAGUACAccAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUacUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 52898 | 0.77 | 0.991426 |
Target: 5'- uUUUAGUACAUcAUcUUUGCUUUCAUCc -3' miRNA: 3'- -AGAUCAUGUAcUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 52859 | 0.97 | 0.28595 |
Target: 5'- uUCUAGUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 52784 | 0.75 | 0.998201 |
Target: 5'- --cGGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 52662 | 0.98 | 0.25688 |
Target: 5'- uUUUAGUACAcGAUGUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUaCUACAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 42255 | 0.94 | 0.397957 |
Target: 5'- uUUUAGUACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 42192 | 0.78 | 0.982836 |
Target: 5'- -aUAGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 42188 | 0.91 | 0.512162 |
Target: 5'- -gUAGUACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- agAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 42065 | 0.73 | 0.999388 |
Target: 5'- aUUUAGUACucGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 41999 | 0.76 | 0.992638 |
Target: 5'- --cAGUACAcGAUcUUUGCUUUCAUCu -3' miRNA: 3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 41873 | 0.67 | 1 |
Target: 5'- ----aUACAcGAUcUUUGCUUUCAUCg -3' miRNA: 3'- agaucAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11638 | 1.14 | 0.033155 |
Target: 5'- uUCUAGUACAUGAUGUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUACUACAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11568 | 0.82 | 0.900201 |
Target: 5'- cUCUAGUACucGAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11477 | 0.8 | 0.953146 |
Target: 5'- -aUAGUACAcGAUcUUUGCUUUCGUCg -3' miRNA: 3'- agAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11442 | 0.78 | 0.982836 |
Target: 5'- -aUAGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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