Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8489 | 3' | -41.6 | NC_002169.1 | + | 120230 | 0.66 | 1 |
Target: 5'- ----aUACAcGAUcUUUGCUUUCGUCg -3' miRNA: 3'- agaucAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 120037 | 0.8 | 0.948477 |
Target: 5'- uUUUAGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 119796 | 0.79 | 0.965415 |
Target: 5'- cUUUGGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 119616 | 0.94 | 0.397957 |
Target: 5'- uUUUAGUACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 119602 | 0.77 | 0.991426 |
Target: 5'- --cAGUACAcGAUcUUUGCUUUCGUCg -3' miRNA: 3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 119518 | 0.78 | 0.980528 |
Target: 5'- uUUUAGUACAcGAUcUUUGCUUUUAUCg -3' miRNA: 3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 119418 | 0.8 | 0.948477 |
Target: 5'- uUUUAGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 111087 | 0.68 | 1 |
Target: 5'- -gUAGUACAUGuUGUgcaagUGUUUugUCGUCu -3' miRNA: 3'- agAUCAUGUACuACAa----ACGAA--AGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 105514 | 0.85 | 0.783393 |
Target: 5'- --cGGUACAUcAUGUUUGCUUUCAUCc -3' miRNA: 3'- agaUCAUGUAcUACAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 105501 | 0.75 | 0.998201 |
Target: 5'- --cAGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 105407 | 0.67 | 1 |
Target: 5'- cUUUAaUACAcGAUcUUUGCUUUCAUCc -3' miRNA: 3'- -AGAUcAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 105400 | 0.82 | 0.900201 |
Target: 5'- cUUUAGUACAcGAUcUUUGCUUUCGUCg -3' miRNA: 3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 105322 | 0.78 | 0.977996 |
Target: 5'- --aAGUACAcaAUGUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUacUACAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 105289 | 0.92 | 0.490289 |
Target: 5'- cUCUAGUACAUGAUcUUUGCUUUCGUa -3' miRNA: 3'- -AGAUCAUGUACUAcAAACGAAAGUAg -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 105145 | 0.75 | 0.998201 |
Target: 5'- -----cACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- agaucaUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 105091 | 0.83 | 0.860333 |
Target: 5'- uUUUAGUACAcGAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 104956 | 0.85 | 0.803919 |
Target: 5'- --cAGUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 104833 | 0.94 | 0.397957 |
Target: 5'- uUUUAGUACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 104769 | 0.76 | 0.99371 |
Target: 5'- ----aUACAUGAUcUUUGCUUUCGUCa -3' miRNA: 3'- agaucAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 71831 | 0.97 | 0.28595 |
Target: 5'- uUCUAGUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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