miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8489 3' -41.6 NC_002169.1 + 11638 1.14 0.033155
Target:  5'- uUCUAGUACAUGAUGUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGUACUACAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 10815 1.03 0.141986
Target:  5'- cUCUAGUACAcGAUGUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUaCUACAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 53040 1 0.200327
Target:  5'- uUCUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 11232 0.99 0.230274
Target:  5'- cUCUAGUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 52662 0.98 0.25688
Target:  5'- uUUUAGUACAcGAUGUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGUaCUACAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 52859 0.97 0.28595
Target:  5'- uUCUAGUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 71831 0.97 0.28595
Target:  5'- uUCUAGUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 104833 0.94 0.397957
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 11012 0.94 0.397957
Target:  5'- gUUUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 119616 0.94 0.397957
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 42255 0.94 0.397957
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 10904 0.93 0.437648
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 105289 0.92 0.490289
Target:  5'- cUCUAGUACAUGAUcUUUGCUUUCGUa -3'
miRNA:   3'- -AGAUCAUGUACUAcAAACGAAAGUAg -5'
8489 3' -41.6 NC_002169.1 + 42188 0.91 0.512162
Target:  5'- -gUAGUACAUGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- agAUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 53123 0.87 0.706753
Target:  5'- --cAGUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 10713 0.86 0.751329
Target:  5'- uUUUAGUACAcaAUGUUUGCUUUCAUCu -3'
miRNA:   3'- -AGAUCAUGUacUACAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 105514 0.85 0.783393
Target:  5'- --cGGUACAUcAUGUUUGCUUUCAUCc -3'
miRNA:   3'- agaUCAUGUAcUACAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 104956 0.85 0.803919
Target:  5'- --cAGUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 53315 0.85 0.803919
Target:  5'- --cAGUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUACUAcAAACGAAAGUAG- -5'
8489 3' -41.6 NC_002169.1 + 105091 0.83 0.860333
Target:  5'- uUUUAGUACAcGAUcUUUGCUUUCAUCg -3'
miRNA:   3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.