Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8489 | 3' | -41.6 | NC_002169.1 | + | 10707 | 0.79 | 0.968948 |
Target: 5'- cUCUAGUACucGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 10713 | 0.86 | 0.751329 |
Target: 5'- uUUUAGUACAcaAUGUUUGCUUUCAUCu -3' miRNA: 3'- -AGAUCAUGUacUACAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 10815 | 1.03 | 0.141986 |
Target: 5'- cUCUAGUACAcGAUGUUUGCUUUCGUCg -3' miRNA: 3'- -AGAUCAUGUaCUACAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 10904 | 0.93 | 0.437648 |
Target: 5'- uUUUAGUACAUGAUcUUUGCUUUCGUCg -3' miRNA: 3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 10935 | 0.79 | 0.965415 |
Target: 5'- cUUUGGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11012 | 0.94 | 0.397957 |
Target: 5'- gUUUAGUACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11034 | 0.79 | 0.968948 |
Target: 5'- cUCUAGUACucGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11132 | 0.78 | 0.977996 |
Target: 5'- gUUUAaUACAUGAUcUUUGCUUUCGUCg -3' miRNA: 3'- -AGAUcAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11173 | 0.66 | 1 |
Target: 5'- ----aUGCAcGAUcUUUGCUUUCGUCg -3' miRNA: 3'- agaucAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11232 | 0.99 | 0.230274 |
Target: 5'- cUCUAGUACAUGAUcUUUGCUUUCGUCg -3' miRNA: 3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11366 | 0.76 | 0.99371 |
Target: 5'- uUUUAaUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUcAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11442 | 0.78 | 0.982836 |
Target: 5'- -aUAGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11477 | 0.8 | 0.953146 |
Target: 5'- -aUAGUACAcGAUcUUUGCUUUCGUCg -3' miRNA: 3'- agAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11568 | 0.82 | 0.900201 |
Target: 5'- cUCUAGUACucGAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11638 | 1.14 | 0.033155 |
Target: 5'- uUCUAGUACAUGAUGUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUACUACAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 41873 | 0.67 | 1 |
Target: 5'- ----aUACAcGAUcUUUGCUUUCAUCg -3' miRNA: 3'- agaucAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 41999 | 0.76 | 0.992638 |
Target: 5'- --cAGUACAcGAUcUUUGCUUUCAUCu -3' miRNA: 3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 42065 | 0.73 | 0.999388 |
Target: 5'- aUUUAGUACucGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 42188 | 0.91 | 0.512162 |
Target: 5'- -gUAGUACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- agAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 42192 | 0.78 | 0.982836 |
Target: 5'- -aUAGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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