Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 42158 | 0.94 | 0.146688 |
Target: 5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 120073 | 0.93 | 0.163936 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 11202 | 0.91 | 0.209527 |
Target: 5'- uUGGACGAAAGCAAAGAUCaUGUAUUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105366 | 0.91 | 0.221042 |
Target: 5'- uUGGACaAAAGCAAAGAUCGUGUAUUAa -3' miRNA: 3'- -ACCUGcUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 53074 | 0.91 | 0.227 |
Target: 5'- uUGGACGAAAGCAAAGAUCaUGUAUUGa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 42289 | 0.9 | 0.233093 |
Target: 5'- uUGGACGAAAGCAAAGAUUGUGUuugACUu -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACA---UGAu -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105534 | 0.89 | 0.265642 |
Target: 5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 41930 | 0.89 | 0.279658 |
Target: 5'- uUGGACGAAAGCAAAGAUCGaGUAUg- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCaCAUGau -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 104867 | 0.89 | 0.286884 |
Target: 5'- uUGGACGAAAGCAAAGAUCGaGUagGCUGa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCaCA--UGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 42220 | 0.88 | 0.309442 |
Target: 5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAugau -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 10870 | 0.87 | 0.333326 |
Target: 5'- uUGGACG-AAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- -ACCUGCuUUCGUUUCUAGCaCAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 119484 | 0.87 | 0.349985 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUcUAUg- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCAcAUGau -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105483 | 0.87 | 0.358534 |
Target: 5'- uUGGACGAAAGCAAAcAUUGUGUACUu -3' miRNA: 3'- -ACCUGCUUUCGUUUcUAGCACAUGAu -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 52817 | 0.87 | 0.358534 |
Target: 5'- -cGAUGAAAGCAAAGAUgGUGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAgCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 10743 | 0.87 | 0.367228 |
Target: 5'- -cGACGAAAGCAAAGAUCaUGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 11070 | 0.87 | 0.367228 |
Target: 5'- -cGACGAAAGCAAAGAUCaUGUACUAg -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 42029 | 0.86 | 0.376066 |
Target: 5'- -cGAUGAAAGCAAAGAUCGUGUAUg- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGau -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 53282 | 0.86 | 0.394168 |
Target: 5'- -cGACGAAAGCAAAGAUCaUGUACUGa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105443 | 0.86 | 0.403428 |
Target: 5'- -cGACGAAAGCAAAGAUUGUGUAUg- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGau -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 11443 | 0.86 | 0.412824 |
Target: 5'- -cGAUGAAAGCAAAGAUUGUGUAUUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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