miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8489 5' -46.6 NC_002169.1 + 41902 0.82 0.600739
Target:  5'- uUGGACGAAAGCAAA-AUCGaGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGCaCAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 41930 0.89 0.279658
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCaCAUGau -5'
8489 5' -46.6 NC_002169.1 + 42029 0.86 0.376066
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGau -5'
8489 5' -46.6 NC_002169.1 + 42030 1.08 0.02193
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 42158 0.94 0.146688
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 42220 0.88 0.309442
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAugau -5'
8489 5' -46.6 NC_002169.1 + 42289 0.9 0.233093
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACA---UGAu -5'
8489 5' -46.6 NC_002169.1 + 42348 0.82 0.578612
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 42417 0.83 0.545781
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 48715 0.66 0.999768
Target:  5'- uUGGGCGAuGGUu-AGAaUUGUGUACg- -3'
miRNA:   3'- -ACCUGCUuUCGuuUCU-AGCACAUGau -5'
8489 5' -46.6 NC_002169.1 + 52696 0.96 0.11059
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 52817 0.87 0.358534
Target:  5'- -cGAUGAAAGCAAAGAUgGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAgCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 52823 0.82 0.600739
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 52934 0.71 0.984565
Target:  5'- -cGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCaCAUGau -5'
8489 5' -46.6 NC_002169.1 + 52944 1.02 0.053501
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGau -5'
8489 5' -46.6 NC_002169.1 + 53062 0.85 0.422355
Target:  5'- uUGGAUGAAAGCAAAGAUgaUGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAgcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 53074 0.91 0.227
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 53154 0.96 0.120445
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 53202 0.83 0.545781
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 53282 0.86 0.394168
Target:  5'- -cGACGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.