miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8489 5' -46.6 NC_002169.1 + 10551 0.77 0.832549
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 10677 0.75 0.917355
Target:  5'- -cGAUGAAAGCAAAGAUCGUuGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCA-CAUgau -5'
8489 5' -46.6 NC_002169.1 + 10743 0.87 0.367228
Target:  5'- -cGACGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 10851 0.83 0.545781
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 10870 0.87 0.333326
Target:  5'- uUGGACG-AAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGCaCAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 10971 0.66 0.99962
Target:  5'- -cGACGAAA-CAAAGAUCaUGUAUUAa -3'
miRNA:   3'- acCUGCUUUcGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 10976 0.86 0.412824
Target:  5'- -cGACGAAAGCAAAcAUCGUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11070 0.87 0.367228
Target:  5'- -cGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11098 1.02 0.053501
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGau -5'
8489 5' -46.6 NC_002169.1 + 11198 0.98 0.093108
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCaCAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11202 0.91 0.209527
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11317 0.98 0.082943
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11330 0.8 0.678528
Target:  5'- -cGACGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACau---GAU- -5'
8489 5' -46.6 NC_002169.1 + 11443 0.86 0.412824
Target:  5'- -cGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11476 0.69 0.994233
Target:  5'- -cGAUGAAAGCAAAcAUCaUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11602 1.03 0.04351
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11604 1.08 0.02193
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11730 0.84 0.482166
Target:  5'- -cGAUGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCaCAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 29549 0.67 0.999068
Target:  5'- gUGGACGAGAaCGAGGAcgaGUGUaaaACUAa -3'
miRNA:   3'- -ACCUGCUUUcGUUUCUag-CACA---UGAU- -5'
8489 5' -46.6 NC_002169.1 + 37286 0.68 0.998853
Target:  5'- cGGAuCGAcgGAGCAGGGAUCGaUG-ACg- -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAGC-ACaUGau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.