Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 129820 | 0.71 | 0.980279 |
Target: 5'- cUGaACGAAcGCGacGAGAUCGUGUGCa- -3' miRNA: 3'- -ACcUGCUUuCGU--UUCUAGCACAUGau -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 120201 | 1.09 | 0.020655 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 120073 | 0.93 | 0.163936 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 119760 | 0.98 | 0.085381 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUACUGa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 119633 | 1.02 | 0.053501 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUGau -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 119582 | 1.09 | 0.020655 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 119484 | 0.87 | 0.349985 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUcUAUg- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCAcAUGau -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 119454 | 0.83 | 0.545781 |
Target: 5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 119356 | 0.83 | 0.524227 |
Target: 5'- -cGAUaAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- acCUGcUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105662 | 1.07 | 0.023989 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACUGu -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105571 | 1 | 0.06966 |
Target: 5'- uUGGAUGAAAGCAAAGAUCGUGUAUUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105534 | 0.89 | 0.265642 |
Target: 5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105483 | 0.87 | 0.358534 |
Target: 5'- uUGGACGAAAGCAAAcAUUGUGUACUu -3' miRNA: 3'- -ACCUGCUUUCGUUUcUAGCACAUGAu -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105443 | 0.86 | 0.403428 |
Target: 5'- -cGACGAAAGCAAAGAUUGUGUAUg- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGau -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105366 | 0.91 | 0.221042 |
Target: 5'- uUGGACaAAAGCAAAGAUCGUGUAUUAa -3' miRNA: 3'- -ACCUGcUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105253 | 0.95 | 0.131111 |
Target: 5'- -cGAUGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105238 | 0.99 | 0.078267 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105128 | 0.8 | 0.700511 |
Target: 5'- --uACGAAAGCAAAGAUCaUGUACUAg -3' miRNA: 3'- accUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 105117 | 0.96 | 0.120445 |
Target: 5'- uUGGACGAAAGCAAAGAUCaUGUACUGa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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8489 | 5' | -46.6 | NC_002169.1 | + | 104995 | 0.83 | 0.545781 |
Target: 5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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