miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8489 5' -46.6 NC_002169.1 + 10851 0.83 0.545781
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 105534 0.89 0.265642
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 104867 0.89 0.286884
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCaCA--UGAU- -5'
8489 5' -46.6 NC_002169.1 + 42220 0.88 0.309442
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUu--- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAugau -5'
8489 5' -46.6 NC_002169.1 + 52817 0.87 0.358534
Target:  5'- -cGAUGAAAGCAAAGAUgGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAgCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 10743 0.87 0.367228
Target:  5'- -cGACGAAAGCAAAGAUCaUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11070 0.87 0.367228
Target:  5'- -cGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 105443 0.86 0.403428
Target:  5'- -cGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGau -5'
8489 5' -46.6 NC_002169.1 + 119356 0.83 0.524227
Target:  5'- -cGAUaAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- acCUGcUUUCGUUUCUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 42289 0.9 0.233093
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACA---UGAu -5'
8489 5' -46.6 NC_002169.1 + 53074 0.91 0.227
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11202 0.91 0.209527
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAUUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11602 1.03 0.04351
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 119633 1.02 0.053501
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCACAUGau -5'
8489 5' -46.6 NC_002169.1 + 105238 0.99 0.078267
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11317 0.98 0.082943
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 52696 0.96 0.11059
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 71668 0.96 0.11059
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 53154 0.96 0.120445
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 120073 0.93 0.163936
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.