Results 1 - 20 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 64769 | 0.67 | 0.99952 |
Target: 5'- uUGGGCGAcuuGGGCAucGGUCGUuuGU-CUGa -3' miRNA: 3'- -ACCUGCU---UUCGUuuCUAGCA--CAuGAU- -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 53282 | 0.86 | 0.394168 |
Target: 5'- -cGACGAAAGCAAAGAUCaUGUACUGa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 105483 | 0.87 | 0.358534 |
Target: 5'- uUGGACGAAAGCAAAcAUUGUGUACUu -3' miRNA: 3'- -ACCUGCUUUCGUUUcUAGCACAUGAu -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 120201 | 1.09 | 0.020655 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGCACAUGAU- -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 129820 | 0.71 | 0.980279 |
Target: 5'- cUGaACGAAcGCGacGAGAUCGUGUGCa- -3' miRNA: 3'- -ACcUGCUUuCGU--UUCUAGCACAUGau -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 10677 | 0.75 | 0.917355 |
Target: 5'- -cGAUGAAAGCAAAGAUCGUuGUGg-- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCA-CAUgau -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 104925 | 0.81 | 0.63411 |
Target: 5'- -cGACGAAAGCAAAGAUCaUGUAUUGa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 52823 | 0.82 | 0.600739 |
Target: 5'- -cGAUGAAAGCAAAcAUCGUGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUcUAGCACAUGAU- -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 53202 | 0.83 | 0.545781 |
Target: 5'- -cGAUGAAAGCAAAGAUCaUGUACUAg -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 11443 | 0.86 | 0.412824 |
Target: 5'- -cGAUGAAAGCAAAGAUUGUGUAUUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGAU- -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 11730 | 0.84 | 0.482166 |
Target: 5'- -cGAUGAAAGCAAAGAUCGaGUACUAg -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCaCAUGAU- -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 42417 | 0.83 | 0.545781 |
Target: 5'- -cGAUGAAAGCAAAGAUCaUGUACUAa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 58439 | 0.67 | 0.999248 |
Target: 5'- uUGGGCGGAGcauacgugcGCAAucuuAUCGUGUACg- -3' miRNA: 3'- -ACCUGCUUU---------CGUUuc--UAGCACAUGau -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 53062 | 0.85 | 0.422355 |
Target: 5'- uUGGAUGAAAGCAAAGAUgaUGUACUAa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAgcACAUGAU- -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 37286 | 0.68 | 0.998853 |
Target: 5'- cGGAuCGAcgGAGCAGGGAUCGaUG-ACg- -3' miRNA: 3'- aCCU-GCU--UUCGUUUCUAGC-ACaUGau -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 42348 | 0.82 | 0.578612 |
Target: 5'- -cGAUGAAAGCAAAGAUCaUGUACUAc -3' miRNA: 3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 10976 | 0.86 | 0.412824 |
Target: 5'- -cGACGAAAGCAAAcAUCGUGUACUAg -3' miRNA: 3'- acCUGCUUUCGUUUcUAGCACAUGAU- -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 42029 | 0.86 | 0.376066 |
Target: 5'- -cGAUGAAAGCAAAGAUCGUGUAUg- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACAUGau -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 84422 | 0.69 | 0.996468 |
Target: 5'- aGGAUGcGAGUucAGGAUCGaaUGUACUAc -3' miRNA: 3'- aCCUGCuUUCGu-UUCUAGC--ACAUGAU- -5' |
|||||||
8489 | 5' | -46.6 | NC_002169.1 | + | 11330 | 0.8 | 0.678528 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGcauuuCUGc -3' miRNA: 3'- acCUGCUUUCGUUUCUAGCACau---GAU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home