miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8490 3' -41.4 NC_002169.1 + 120235 1.12 0.050261
Target:  5'- uUGUAAUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AUAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11478 1.1 0.058601
Target:  5'- aAUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aUAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11766 1.1 0.064233
Target:  5'- aUAUAAUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AUAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 42194 1.09 0.066224
Target:  5'- uUAUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AUAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11441 1.08 0.077103
Target:  5'- aAUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aUAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105398 1.07 0.087019
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 119420 1.05 0.113935
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 120039 1.05 0.113935
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 119602 1.05 0.120895
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11171 1.05 0.120895
Target:  5'- --aAAUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 10937 1.04 0.128248
Target:  5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 119794 1.04 0.128248
Target:  5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11130 1.03 0.148474
Target:  5'- -uUAAUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 10902 1.03 0.148474
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11230 1.03 0.152853
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105501 1.02 0.15735
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 52784 1.02 0.161965
Target:  5'- --cGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11364 1.01 0.192292
Target:  5'- -uUAAUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 52857 1 0.197807
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 71829 1 0.197807
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.