miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8490 3' -41.4 NC_002169.1 + 10323 0.66 1
Target:  5'- aAUcGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aUAuUAUGUGCU--------AGAAACGaaAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 10520 0.74 0.999349
Target:  5'- -----cACaACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auauuaUG-UGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 10709 0.93 0.423465
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGuGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 10711 0.69 0.999998
Target:  5'- -uUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- auAUUAUGUGcUAgAAACGAA----------AGCAG- -5'
8490 3' -41.4 NC_002169.1 + 10817 0.97 0.29032
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- auAUUAUGUGCUAgAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 10902 1.03 0.148474
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 10937 1.04 0.128248
Target:  5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11010 0.89 0.621772
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 11036 0.93 0.423465
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGuGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11130 1.03 0.148474
Target:  5'- -uUAAUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11171 1.05 0.120895
Target:  5'- --aAAUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11230 1.03 0.152853
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11283 0.79 0.971235
Target:  5'- -uUAAUACACaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGcUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 11364 1.01 0.192292
Target:  5'- -uUAAUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11441 1.08 0.077103
Target:  5'- aAUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aUAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11478 1.1 0.058601
Target:  5'- aAUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aUAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11559 0.71 0.999942
Target:  5'- -----aACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- auauuaUGUGcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11570 0.82 0.91851
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGuGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 11636 0.79 0.97433
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAgAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 11766 1.1 0.064233
Target:  5'- aUAUAAUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AUAUUAUGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.