miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8490 3' -41.4 NC_002169.1 + 22486 0.67 1
Target:  5'- -cUAcgGCGCGGUCg--GCgcaguauggUUCGUCg -3'
miRNA:   3'- auAUuaUGUGCUAGaaaCGa--------AAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 27556 0.7 0.999996
Target:  5'- gAUGAgauuUGCACGAUUg--GCgcgUCGUCa -3'
miRNA:   3'- aUAUU----AUGUGCUAGaaaCGaa-AGCAG- -5'
8490 3' -41.4 NC_002169.1 + 29673 0.7 0.999992
Target:  5'- -----aACGCGAUCggUUGCcUUUUGUCu -3'
miRNA:   3'- auauuaUGUGCUAGa-AACG-AAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 31417 0.69 0.999998
Target:  5'- ---cGUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- auauUAUGUGCUAGAa-----ACgAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 41053 0.67 1
Target:  5'- cGUAAUcgaAUACGGUCUUUGg---CGUCg -3'
miRNA:   3'- aUAUUA---UGUGCUAGAAACgaaaGCAG- -5'
8490 3' -41.4 NC_002169.1 + 41771 0.87 0.702629
Target:  5'- ---cAUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauUAUGuGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 41872 0.87 0.713977
Target:  5'- ---cAUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auauUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 41999 0.9 0.598583
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 42063 0.94 0.41351
Target:  5'- -uUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGuGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 42186 0.93 0.423465
Target:  5'- uUGUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AUAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 42194 1.09 0.066224
Target:  5'- uUAUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AUAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 42257 0.89 0.621772
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 42378 0.8 0.956174
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauuaUGUGcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 42447 0.8 0.956174
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauuaUGUGcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 45715 0.66 1
Target:  5'- aGUAucUGCGCGA-CUUggccgGCUaUCGUCg -3'
miRNA:   3'- aUAUu-AUGUGCUaGAAa----CGAaAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 52664 0.84 0.866016
Target:  5'- -uUAGUACACGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAgAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 52784 1.02 0.161965
Target:  5'- --cGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 52857 1 0.197807
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 52900 0.74 0.999349
Target:  5'- -uUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- auAUUAUGUGcUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 52976 0.79 0.971235
Target:  5'- -uUAGUACACcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGcUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.