miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8490 3' -41.4 NC_002169.1 + 53042 0.89 0.633388
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 53123 1 0.203459
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 53235 0.98 0.260846
Target:  5'- --cAAUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 53315 0.98 0.260846
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 59831 0.69 0.999999
Target:  5'- cAUGu--CGCGAUCgaugUUGCcguUUUCGUCg -3'
miRNA:   3'- aUAUuauGUGCUAGa---AACG---AAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 71637 0.91 0.541338
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 71829 1 0.197807
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 104767 1 0.203459
Target:  5'- --cAAUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 104835 0.89 0.621772
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 104956 0.98 0.260846
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 104957 0.73 0.999757
Target:  5'- cAUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aUAUUAuGUgcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105026 0.85 0.790141
Target:  5'- ----cUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauuAUGuGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105093 0.93 0.423465
Target:  5'- -uUAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 105145 0.78 0.979782
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auauuaUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 105204 1 0.209251
Target:  5'- -uUAAUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105287 0.95 0.348044
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAg -5'
8490 3' -41.4 NC_002169.1 + 105322 0.78 0.982161
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGcUAgAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105398 1.07 0.087019
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105409 0.91 0.518928
Target:  5'- -uUAAUACACGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 105501 1.02 0.15735
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.