miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8490 3' -41.4 NC_002169.1 + 105093 0.93 0.423465
Target:  5'- -uUAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 105026 0.85 0.790141
Target:  5'- ----cUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauuAUGuGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 104957 0.73 0.999757
Target:  5'- cAUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aUAUUAuGUgcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 104956 0.98 0.260846
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 104835 0.89 0.621772
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 104767 1 0.203459
Target:  5'- --cAAUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 71829 1 0.197807
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 71637 0.91 0.541338
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 59831 0.69 0.999999
Target:  5'- cAUGu--CGCGAUCgaugUUGCcguUUUCGUCg -3'
miRNA:   3'- aUAUuauGUGCUAGa---AACG---AAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 53315 0.98 0.260846
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 53235 0.98 0.260846
Target:  5'- --cAAUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 53123 1 0.203459
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 53042 0.89 0.633388
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 52976 0.79 0.971235
Target:  5'- -uUAGUACACcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGcUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 52900 0.74 0.999349
Target:  5'- -uUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- auAUUAUGUGcUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 52857 1 0.197807
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 52784 1.02 0.161965
Target:  5'- --cGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 52664 0.84 0.866016
Target:  5'- -uUAGUACACGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAgAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 45715 0.66 1
Target:  5'- aGUAucUGCGCGA-CUUggccgGCUaUCGUCg -3'
miRNA:   3'- aUAUu-AUGUGCUaGAAa----CGAaAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 42447 0.8 0.956174
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauuaUGUGcUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.