miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8490 3' -41.4 NC_002169.1 + 129654 0.66 1
Target:  5'- gAUGGUgcACACGAUCUcgucGCgUUCGUUc -3'
miRNA:   3'- aUAUUA--UGUGCUAGAaa--CGaAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 127259 0.68 1
Target:  5'- aUAUGcacCACGAUCgcuucgUGCUcgUCGUCa -3'
miRNA:   3'- -AUAUuauGUGCUAGaa----ACGAa-AGCAG- -5'
8490 3' -41.4 NC_002169.1 + 126841 0.67 1
Target:  5'- aAUGAcGCGCGA-C-UUGCUUUCGcCg -3'
miRNA:   3'- aUAUUaUGUGCUaGaAACGAAAGCaG- -5'
8490 3' -41.4 NC_002169.1 + 120235 1.12 0.050261
Target:  5'- uUGUAAUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AUAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 120039 1.05 0.113935
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 119794 1.04 0.128248
Target:  5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 119614 0.89 0.621772
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 119602 1.05 0.120895
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 119516 0.89 0.610167
Target:  5'- -uUAGUACACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 119420 1.05 0.113935
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 119324 0.89 0.610167
Target:  5'- ---cAUAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauUAUgUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105695 0.96 0.314096
Target:  5'- uUGUAAUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- -AUAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 105601 0.87 0.736389
Target:  5'- ---cAUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auauUAUGUGcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105501 1.02 0.15735
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105409 0.91 0.518928
Target:  5'- -uUAAUACACGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 105398 1.07 0.087019
Target:  5'- -uUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105322 0.78 0.982161
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- auaUUAUGUGcUAgAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105287 0.95 0.348044
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAg -5'
8490 3' -41.4 NC_002169.1 + 105204 1 0.209251
Target:  5'- -uUAAUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105145 0.78 0.979782
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auauuaUGUGCUAGAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.