miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8490 3' -41.4 NC_002169.1 + 11283 0.79 0.971235
Target:  5'- -uUAAUACACaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGcUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 42378 0.8 0.956174
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauuaUGUGcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 42447 0.8 0.956174
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauuaUGUGcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11570 0.82 0.91851
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGuGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 52664 0.84 0.866016
Target:  5'- -uUAGUACACGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAgAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 105026 0.85 0.790141
Target:  5'- ----cUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauuAUGuGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105601 0.87 0.736389
Target:  5'- ---cAUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auauUAUGUGcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 41872 0.87 0.713977
Target:  5'- ---cAUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auauUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 41771 0.87 0.702629
Target:  5'- ---cAUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauUAUGuGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 53042 0.89 0.633388
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 104835 0.89 0.621772
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 42257 0.89 0.621772
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 119614 0.89 0.621772
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 11010 0.89 0.621772
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 119516 0.89 0.610167
Target:  5'- -uUAGUACACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 119324 0.89 0.610167
Target:  5'- ---cAUAgACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauUAUgUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 41999 0.9 0.598583
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 71637 0.91 0.541338
Target:  5'- --cAGUACACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auaUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 105409 0.91 0.518928
Target:  5'- -uUAAUACACGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 11036 0.93 0.423465
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGuGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.