miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8490 5' -44.6 NC_002169.1 + 11732 1.09 0.030518
Target:  5'- gUCGAUGAAAGCAAAGAUCGAGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCUCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 105255 1.01 0.094711
Target:  5'- uUCGAUGAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 71797 1 0.106402
Target:  5'- cUCGAUGAAAGCAAAGAUCGuGUACUGa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 52932 0.95 0.187677
Target:  5'- cUCGAUGAAAGCAAAGAUUGAGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCUCAUGau -5'
8490 5' -44.6 NC_002169.1 + 105532 0.95 0.198297
Target:  5'- uUCGAUGAAAGCAAAGAUCGuGUAUUAc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 42158 0.93 0.246129
Target:  5'- -aGAUGAAAGCAAAGAUCGuGUACUGa -3'
miRNA:   3'- agCUACUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 11196 0.92 0.273447
Target:  5'- -gGAcGAAAGCAAAGAUCGAGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCUCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 52815 0.92 0.280646
Target:  5'- cUCGAUGAAAGCAAAGAUgGuGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAgCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 42031 0.92 0.295493
Target:  5'- cUCGAUGAAAGCAAAGAUCGuGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCuCAUGau -5'
8490 5' -44.6 NC_002169.1 + 105236 0.91 0.310944
Target:  5'- gUCGAcGAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 11445 0.91 0.318897
Target:  5'- gUCGAUGAAAGCAAAGAUUGuGUAUUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 11315 0.91 0.327002
Target:  5'- uUCGAcGAAAGCAAAGAUCGuGUACUAu -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 119762 0.91 0.335258
Target:  5'- uUCGAcGAAAGCAAAGAUCGuGUACUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 119452 0.89 0.378795
Target:  5'- uUCGAUGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 10849 0.89 0.378795
Target:  5'- gUCGAUGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 104997 0.89 0.378795
Target:  5'- uUCGAUGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 53204 0.89 0.378795
Target:  5'- gUCGAUGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 42419 0.89 0.378795
Target:  5'- gUCGAUGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 42350 0.89 0.416254
Target:  5'- cUCGAUGAAAGCAAAGAUCauGUACUAc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 105569 0.88 0.425967
Target:  5'- -gGAUGAAAGCAAAGAUCGuGUAUUAa -3'
miRNA:   3'- agCUACUUUCGUUUCUAGCuCAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.