miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8490 5' -44.6 NC_002169.1 + 52698 0.72 0.992606
Target:  5'- -gGAcGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 10741 0.8 0.831702
Target:  5'- uUCGAcGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 11068 0.8 0.831702
Target:  5'- uUCGAcGAAAGCAAAGAUCauGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 11604 0.78 0.890207
Target:  5'- -gGAcGAAAGCAAAGAUCGuGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 105441 0.78 0.911278
Target:  5'- uUCGAcGAAAGCAAAGAUUGuGUAUg- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCuCAUGau -5'
8490 5' -44.6 NC_002169.1 + 119635 0.77 0.935344
Target:  5'- -gGAcGAAAGCAAAGAUCGuGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCuCAUGau -5'
8490 5' -44.6 NC_002169.1 + 41904 0.76 0.95479
Target:  5'- -gGAcGAAAGCAAA-AUCGAGUACUAa -3'
miRNA:   3'- agCUaCUUUCGUUUcUAGCUCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 11474 0.76 0.95895
Target:  5'- gUCGAUGAAAGCAAAcAUCauGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 10551 0.75 0.962839
Target:  5'- -aGAUGAAAGCAAAcAUUGuGUACUAa -3'
miRNA:   3'- agCUACUUUCGUUUcUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 104869 0.83 0.675178
Target:  5'- -gGAcGAAAGCAAAGAUCGAGUagGCUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCUCA--UGAU- -5'
8490 5' -44.6 NC_002169.1 + 42032 0.83 0.663948
Target:  5'- -gGAcGAAAGCAAAGAUCGuGUACUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 104987 0.84 0.618823
Target:  5'- uUCGAUGAAAGCAAAGAUCauGUGCg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcuCAUGau -5'
8490 5' -44.6 NC_002169.1 + 105532 0.95 0.198297
Target:  5'- uUCGAUGAAAGCAAAGAUCGuGUAUUAc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 52815 0.92 0.280646
Target:  5'- cUCGAUGAAAGCAAAGAUgGuGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAgCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 105236 0.91 0.310944
Target:  5'- gUCGAcGAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 11315 0.91 0.327002
Target:  5'- uUCGAcGAAAGCAAAGAUCGuGUACUAu -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 10849 0.89 0.378795
Target:  5'- gUCGAUGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 119452 0.89 0.378795
Target:  5'- uUCGAUGAAAGCAAAGAUCauGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 119354 0.87 0.486915
Target:  5'- uUCGAUaAAAGCAAAGAUCGuGUACUAa -3'
miRNA:   3'- -AGCUAcUUUCGUUUCUAGCuCAUGAU- -5'
8490 5' -44.6 NC_002169.1 + 120071 0.85 0.562757
Target:  5'- uUCGAcGAAAGCAAAGAUCGuGUAUUAc -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCuCAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.