miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8491 5' -57.8 NC_002169.1 + 12677 1.06 0.002423
Target:  5'- uUUAGCCUCGACCGUCAACGCCGCCACc -3'
miRNA:   3'- -AAUCGGAGCUGGCAGUUGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 15822 0.73 0.374263
Target:  5'- -cAGCgUCGucgugaccGCCGcCGACGCUGCCGCa -3'
miRNA:   3'- aaUCGgAGC--------UGGCaGUUGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 79970 0.73 0.374263
Target:  5'- gUAGCCgagauggcgggCGGCCucuUCGACGCUGCCGCu -3'
miRNA:   3'- aAUCGGa----------GCUGGc--AGUUGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 19361 0.73 0.382538
Target:  5'- -gGGCC-CGauagcgauaGCCGUCGACGCCGUCGa -3'
miRNA:   3'- aaUCGGaGC---------UGGCAGUUGCGGCGGUg -5'
8491 5' -57.8 NC_002169.1 + 57263 0.73 0.41683
Target:  5'- -gAGCCUCGaACUGUCcacCGCCGUCAa -3'
miRNA:   3'- aaUCGGAGC-UGGCAGuu-GCGGCGGUg -5'
8491 5' -57.8 NC_002169.1 + 34907 0.72 0.434664
Target:  5'- -gAGCacuaUC-ACCGUCAACGUCGCUGCg -3'
miRNA:   3'- aaUCGg---AGcUGGCAGUUGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 96930 0.72 0.452934
Target:  5'- -cAGCgUCGACCG-CAuCGCCGUCAa -3'
miRNA:   3'- aaUCGgAGCUGGCaGUuGCGGCGGUg -5'
8491 5' -57.8 NC_002169.1 + 102091 0.71 0.519913
Target:  5'- -cGGCCggaGAgCG-CAACGUCGCCACc -3'
miRNA:   3'- aaUCGGag-CUgGCaGUUGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 39377 0.7 0.580218
Target:  5'- --uGCCgaUCGgcaccGCCGUCGucauCGCCGCCAUg -3'
miRNA:   3'- aauCGG--AGC-----UGGCAGUu---GCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 39260 0.7 0.580218
Target:  5'- -aGGCgUCGgugagugcACCGUCGacgACGCCGuCCGCg -3'
miRNA:   3'- aaUCGgAGC--------UGGCAGU---UGCGGC-GGUG- -5'
8491 5' -57.8 NC_002169.1 + 46059 0.69 0.600689
Target:  5'- --cGUCUCGauGCUGUCcuCGCCGUCACc -3'
miRNA:   3'- aauCGGAGC--UGGCAGuuGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 41293 0.69 0.621253
Target:  5'- --uGUCguuGCCGUCGACGUCGUCACg -3'
miRNA:   3'- aauCGGagcUGGCAGUUGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 42795 0.69 0.639792
Target:  5'- cUAGCgCUCGACacgcugugcguaGUCAaagGCGgCGCCGCg -3'
miRNA:   3'- aAUCG-GAGCUGg-----------CAGU---UGCgGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 100403 0.69 0.641852
Target:  5'- -cGGUaucgUUCaGACCGUCGGCGCUaaagGCCACg -3'
miRNA:   3'- aaUCG----GAG-CUGGCAGUUGCGG----CGGUG- -5'
8491 5' -57.8 NC_002169.1 + 45931 0.69 0.641852
Target:  5'- --uGCgUCGuCCGgCAcCGCCGCCGCc -3'
miRNA:   3'- aauCGgAGCuGGCaGUuGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 26360 0.69 0.641852
Target:  5'- -aAGCCUUcGCCGgCGACGUCGUUGCg -3'
miRNA:   3'- aaUCGGAGcUGGCaGUUGCGGCGGUG- -5'
8491 5' -57.8 NC_002169.1 + 110408 0.68 0.662418
Target:  5'- --cGCCcuuUUGGCCGUgAACGCCGCa-- -3'
miRNA:   3'- aauCGG---AGCUGGCAgUUGCGGCGgug -5'
8491 5' -57.8 NC_002169.1 + 56990 0.68 0.682886
Target:  5'- --cGCCgUGGCCGcuuUgGACGCCGCCGg -3'
miRNA:   3'- aauCGGaGCUGGC---AgUUGCGGCGGUg -5'
8491 5' -57.8 NC_002169.1 + 120446 0.68 0.682886
Target:  5'- -aAGCC-CGACaccauauacguCGUCAACGuuGCCGa -3'
miRNA:   3'- aaUCGGaGCUG-----------GCAGUUGCggCGGUg -5'
8491 5' -57.8 NC_002169.1 + 36941 0.67 0.723239
Target:  5'- -cGGCUacgUGGCCGacuUCAACGCCGaCACg -3'
miRNA:   3'- aaUCGGa--GCUGGC---AGUUGCGGCgGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.