Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8491 | 5' | -57.8 | NC_002169.1 | + | 6223 | 0.66 | 0.762322 |
Target: 5'- gUAGUCgCcGCCGcCGcCGCCGCCGCc -3' miRNA: 3'- aAUCGGaGcUGGCaGUuGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 12677 | 1.06 | 0.002423 |
Target: 5'- uUUAGCCUCGACCGUCAACGCCGCCACc -3' miRNA: 3'- -AAUCGGAGCUGGCAGUUGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 15822 | 0.73 | 0.374263 |
Target: 5'- -cAGCgUCGucgugaccGCCGcCGACGCUGCCGCa -3' miRNA: 3'- aaUCGgAGC--------UGGCaGUUGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 19361 | 0.73 | 0.382538 |
Target: 5'- -gGGCC-CGauagcgauaGCCGUCGACGCCGUCGa -3' miRNA: 3'- aaUCGGaGC---------UGGCAGUUGCGGCGGUg -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 22362 | 0.66 | 0.79044 |
Target: 5'- -cGGCCagcacgugcCGGCCGgaaagauugcgcUCGGCGUCGCCAUg -3' miRNA: 3'- aaUCGGa--------GCUGGC------------AGUUGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 26360 | 0.69 | 0.641852 |
Target: 5'- -aAGCCUUcGCCGgCGACGUCGUUGCg -3' miRNA: 3'- aaUCGGAGcUGGCaGUUGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 34907 | 0.72 | 0.434664 |
Target: 5'- -gAGCacuaUC-ACCGUCAACGUCGCUGCg -3' miRNA: 3'- aaUCGg---AGcUGGCAGUUGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 36941 | 0.67 | 0.723239 |
Target: 5'- -cGGCUacgUGGCCGacuUCAACGCCGaCACg -3' miRNA: 3'- aaUCGGa--GCUGGC---AGUUGCGGCgGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 38000 | 0.66 | 0.762322 |
Target: 5'- --cGgCUCGACUGUaCAACaaaGCCGCgGCa -3' miRNA: 3'- aauCgGAGCUGGCA-GUUG---CGGCGgUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 39260 | 0.7 | 0.580218 |
Target: 5'- -aGGCgUCGgugagugcACCGUCGacgACGCCGuCCGCg -3' miRNA: 3'- aaUCGgAGC--------UGGCAGU---UGCGGC-GGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 39377 | 0.7 | 0.580218 |
Target: 5'- --uGCCgaUCGgcaccGCCGUCGucauCGCCGCCAUg -3' miRNA: 3'- aauCGG--AGC-----UGGCAGUu---GCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 40184 | 0.66 | 0.802235 |
Target: 5'- aUGGCCaucaguguggugaUCGAucCCGUCAcguacaucaacauuaGCGUCGCCAa -3' miRNA: 3'- aAUCGG-------------AGCU--GGCAGU---------------UGCGGCGGUg -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 41293 | 0.69 | 0.621253 |
Target: 5'- --uGUCguuGCCGUCGACGUCGUCACg -3' miRNA: 3'- aauCGGagcUGGCAGUUGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 42795 | 0.69 | 0.639792 |
Target: 5'- cUAGCgCUCGACacgcugugcguaGUCAaagGCGgCGCCGCg -3' miRNA: 3'- aAUCG-GAGCUGg-----------CAGU---UGCgGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 45931 | 0.69 | 0.641852 |
Target: 5'- --uGCgUCGuCCGgCAcCGCCGCCGCc -3' miRNA: 3'- aauCGgAGCuGGCaGUuGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 46059 | 0.69 | 0.600689 |
Target: 5'- --cGUCUCGauGCUGUCcuCGCCGUCACc -3' miRNA: 3'- aauCGGAGC--UGGCAGuuGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 48127 | 0.67 | 0.733153 |
Target: 5'- --uGUCUCauacaaaccGCCGUCGGCGCCGUCGu -3' miRNA: 3'- aauCGGAGc--------UGGCAGUUGCGGCGGUg -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 53443 | 0.67 | 0.74102 |
Target: 5'- -aAGCCggucgggaaacgCGGCCaaguaucagGUCGuCGCCGCCGCc -3' miRNA: 3'- aaUCGGa-----------GCUGG---------CAGUuGCGGCGGUG- -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 55393 | 0.66 | 0.79044 |
Target: 5'- uUUGGCgUCGAgauauagugaaUCGUCGACGUCGCgGa -3' miRNA: 3'- -AAUCGgAGCU-----------GGCAGUUGCGGCGgUg -5' |
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8491 | 5' | -57.8 | NC_002169.1 | + | 56990 | 0.68 | 0.682886 |
Target: 5'- --cGCCgUGGCCGcuuUgGACGCCGCCGg -3' miRNA: 3'- aauCGGaGCUGGC---AgUUGCGGCGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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