miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8494 5' -57.2 NC_002169.1 + 21639 0.7 0.652873
Target:  5'- -uACGUGAGCGGCgccaGGUGggauccgcucgUGUCGGCGa -3'
miRNA:   3'- guUGCACUCGCCG----CCGCa----------GCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 15985 0.71 0.602205
Target:  5'- gCAGCGUcGGCGGCGGUcacgacgacgcuGUCGUC-ACAc -3'
miRNA:   3'- -GUUGCAcUCGCCGCCG------------CAGCAGcUGU- -5'
8494 5' -57.2 NC_002169.1 + 1327 0.72 0.552069
Target:  5'- aGACGaUGAcgGCGGCGGCGgCGgCGGCGg -3'
miRNA:   3'- gUUGC-ACU--CGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 15326 0.72 0.522583
Target:  5'- aCAACGacGGCGGCGGUGgCGgCGGCAa -3'
miRNA:   3'- -GUUGCacUCGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 127954 0.73 0.493724
Target:  5'- gCGGCGgcGGCGGCGGCGUCGUaauuuUGAUu -3'
miRNA:   3'- -GUUGCacUCGCCGCCGCAGCA-----GCUGu -5'
8494 5' -57.2 NC_002169.1 + 102734 0.73 0.474895
Target:  5'- cCGGCGgcGGCGGCGGCGaCGagGACAa -3'
miRNA:   3'- -GUUGCacUCGCCGCCGCaGCagCUGU- -5'
8494 5' -57.2 NC_002169.1 + 6380 0.73 0.456432
Target:  5'- gCGGCGgcGGCGGCGGCGacuacagCGUCGAUg -3'
miRNA:   3'- -GUUGCacUCGCCGCCGCa------GCAGCUGu -5'
8494 5' -57.2 NC_002169.1 + 118941 0.74 0.438362
Target:  5'- uUAACG---GCGGCGGCGUCGUCGuuGu -3'
miRNA:   3'- -GUUGCacuCGCCGCCGCAGCAGCugU- -5'
8494 5' -57.2 NC_002169.1 + 91702 0.74 0.395051
Target:  5'- aCAACGaUGGcGaCGGCGuCGUCGUCGACAg -3'
miRNA:   3'- -GUUGC-ACU-C-GCCGCcGCAGCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 124925 0.75 0.386726
Target:  5'- gGugG-GGGCGGCGGCGgcggCGgcggCGACAg -3'
miRNA:   3'- gUugCaCUCGCCGCCGCa---GCa---GCUGU- -5'
8494 5' -57.2 NC_002169.1 + 108721 0.75 0.354603
Target:  5'- gAAUGUG-GCGGCGGCGgCGgCGACGa -3'
miRNA:   3'- gUUGCACuCGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 39441 0.76 0.324409
Target:  5'- gCAAa-UGAacGCGGaCGGCGUCGUCGACGg -3'
miRNA:   3'- -GUUgcACU--CGCC-GCCGCAGCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 1974 0.79 0.234013
Target:  5'- uCGACGUGGGUauuGCGGCGUCG-CGACGc -3'
miRNA:   3'- -GUUGCACUCGc--CGCCGCAGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 30478 1.08 0.002522
Target:  5'- gCAACGUGAGCGGCGGCGUCGUCGACAa -3'
miRNA:   3'- -GUUGCACUCGCCGCCGCAGCAGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.