miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8494 5' -57.2 NC_002169.1 + 91702 0.74 0.395051
Target:  5'- aCAACGaUGGcGaCGGCGuCGUCGUCGACAg -3'
miRNA:   3'- -GUUGC-ACU-C-GCCGCcGCAGCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 95979 0.68 0.780003
Target:  5'- aAACGUGAuggucGaCGGCGGCGacauguugUCGUgCGGCGa -3'
miRNA:   3'- gUUGCACU-----C-GCCGCCGC--------AGCA-GCUGU- -5'
8494 5' -57.2 NC_002169.1 + 96892 0.69 0.673082
Target:  5'- aCAAUGggcaucacCGGCaGCGUCGUCGACAc -3'
miRNA:   3'- -GUUGCacuc----GCCGcCGCAGCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 100444 0.66 0.871338
Target:  5'- aCAACGaaUGcauagucuGCGGCGGCGaCGgCGGCGa -3'
miRNA:   3'- -GUUGC--ACu-------CGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 102734 0.73 0.474895
Target:  5'- cCGGCGgcGGCGGCGGCGaCGagGACAa -3'
miRNA:   3'- -GUUGCacUCGCCGCCGCaGCagCUGU- -5'
8494 5' -57.2 NC_002169.1 + 108721 0.75 0.354603
Target:  5'- gAAUGUG-GCGGCGGCGgCGgCGACGa -3'
miRNA:   3'- gUUGCACuCGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 114291 0.68 0.76421
Target:  5'- -cACGUGAcuguGCGGCGGCucguuuuaucgaauuGagucgccUCGUCGACAg -3'
miRNA:   3'- guUGCACU----CGCCGCCG---------------C-------AGCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 117565 0.67 0.78912
Target:  5'- aAACGacaagaaGGCGGCGGCGaCGaCGACGa -3'
miRNA:   3'- gUUGCac-----UCGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 117845 0.66 0.848594
Target:  5'- aCGACGgGAGCGGCGcGCaucuucUUGUUGGCu -3'
miRNA:   3'- -GUUGCaCUCGCCGC-CGc-----AGCAGCUGu -5'
8494 5' -57.2 NC_002169.1 + 118941 0.74 0.438362
Target:  5'- uUAACG---GCGGCGGCGUCGUCGuuGu -3'
miRNA:   3'- -GUUGCacuCGCCGCCGCAGCAGCugU- -5'
8494 5' -57.2 NC_002169.1 + 121121 0.69 0.687153
Target:  5'- ---gGUGGGCauguuggucaagGGCGGCGUCGagccguuuuacguauUCGACAu -3'
miRNA:   3'- guugCACUCG------------CCGCCGCAGC---------------AGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 124925 0.75 0.386726
Target:  5'- gGugG-GGGCGGCGGCGgcggCGgcggCGACAg -3'
miRNA:   3'- gUugCaCUCGCCGCCGCa---GCa---GCUGU- -5'
8494 5' -57.2 NC_002169.1 + 127028 0.68 0.761387
Target:  5'- gCAAgGUGAGUcucuuGCuGGCGUCuGUCGGCGa -3'
miRNA:   3'- -GUUgCACUCGc----CG-CCGCAG-CAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 127954 0.73 0.493724
Target:  5'- gCGGCGgcGGCGGCGGCGUCGUaauuuUGAUu -3'
miRNA:   3'- -GUUGCacUCGCCGCCGCAGCA-----GCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.