miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8494 5' -57.2 NC_002169.1 + 1060 0.66 0.832457
Target:  5'- -cACGcUGA-CGGCGGCcauuUCGUCGAUAu -3'
miRNA:   3'- guUGC-ACUcGCCGCCGc---AGCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 1177 0.69 0.683141
Target:  5'- gGACGaUGAGaacgauuGGCuGGCGUCGaCGACAg -3'
miRNA:   3'- gUUGC-ACUCg------CCG-CCGCAGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 1327 0.72 0.552069
Target:  5'- aGACGaUGAcgGCGGCGGCGgCGgCGGCGg -3'
miRNA:   3'- gUUGC-ACU--CGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 1555 0.67 0.824116
Target:  5'- uGGCGguGGCGGCGGUGgCGgCGGCGc -3'
miRNA:   3'- gUUGCacUCGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 1974 0.79 0.234013
Target:  5'- uCGACGUGGGUauuGCGGCGUCG-CGACGc -3'
miRNA:   3'- -GUUGCACUCGc--CGCCGCAGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 4439 0.67 0.806929
Target:  5'- aCGACGacGA-CGGCGGCGaCGgCGACAa -3'
miRNA:   3'- -GUUGCa-CUcGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 6380 0.73 0.456432
Target:  5'- gCGGCGgcGGCGGCGGCGacuacagCGUCGAUg -3'
miRNA:   3'- -GUUGCacUCGCCGCCGCa------GCAGCUGu -5'
8494 5' -57.2 NC_002169.1 + 12505 0.66 0.832457
Target:  5'- --uUGUGuGGCuGGUGGCGgCGUUGACGg -3'
miRNA:   3'- guuGCAC-UCG-CCGCCGCaGCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 15326 0.72 0.522583
Target:  5'- aCAACGacGGCGGCGGUGgCGgCGGCAa -3'
miRNA:   3'- -GUUGCacUCGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 15985 0.71 0.602205
Target:  5'- gCAGCGUcGGCGGCGGUcacgacgacgcuGUCGUC-ACAc -3'
miRNA:   3'- -GUUGCAcUCGCCGCCG------------CAGCAGcUGU- -5'
8494 5' -57.2 NC_002169.1 + 21639 0.7 0.652873
Target:  5'- -uACGUGAGCGGCgccaGGUGggauccgcucgUGUCGGCGa -3'
miRNA:   3'- guUGCACUCGCCG----CCGCa----------GCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 30478 1.08 0.002522
Target:  5'- gCAACGUGAGCGGCGGCGUCGUCGACAa -3'
miRNA:   3'- -GUUGCACUCGCCGCCGCAGCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 34508 0.67 0.806929
Target:  5'- ----uUGcGGCGGCGGCGcCGUCGcCGa -3'
miRNA:   3'- guugcAC-UCGCCGCCGCaGCAGCuGU- -5'
8494 5' -57.2 NC_002169.1 + 39441 0.76 0.324409
Target:  5'- gCAAa-UGAacGCGGaCGGCGUCGUCGACGg -3'
miRNA:   3'- -GUUgcACU--CGCC-GCCGCAGCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 39542 0.68 0.732642
Target:  5'- gCGGCGaUGAcGaCGGCGGUGcCGaUCGGCAa -3'
miRNA:   3'- -GUUGC-ACU-C-GCCGCCGCaGC-AGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 43956 0.67 0.806929
Target:  5'- uGACGUGAGaCGGCacguuucgaacGuCGUCGUCGAa- -3'
miRNA:   3'- gUUGCACUC-GCCG-----------CcGCAGCAGCUgu -5'
8494 5' -57.2 NC_002169.1 + 51188 0.66 0.848594
Target:  5'- gAACGUGAcgaGGUGGUGuUCGUCGcuGCGa -3'
miRNA:   3'- gUUGCACUcg-CCGCCGC-AGCAGC--UGU- -5'
8494 5' -57.2 NC_002169.1 + 59964 0.69 0.713035
Target:  5'- cCGACGUGGaCGGCGuCGcCGUCGAUu -3'
miRNA:   3'- -GUUGCACUcGCCGCcGCaGCAGCUGu -5'
8494 5' -57.2 NC_002169.1 + 60201 0.66 0.871338
Target:  5'- uGGCGauuuUGcucauuGCGGCGGCGaUGUCGAUg -3'
miRNA:   3'- gUUGC----ACu-----CGCCGCCGCaGCAGCUGu -5'
8494 5' -57.2 NC_002169.1 + 82861 0.66 0.856376
Target:  5'- -uGCGgcuGCGGCGGCGUUcuuuaacUCGGCGg -3'
miRNA:   3'- guUGCacuCGCCGCCGCAGc------AGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.