Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8494 | 5' | -57.2 | NC_002169.1 | + | 30478 | 1.08 | 0.002522 |
Target: 5'- gCAACGUGAGCGGCGGCGUCGUCGACAa -3' miRNA: 3'- -GUUGCACUCGCCGCCGCAGCAGCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 1974 | 0.79 | 0.234013 |
Target: 5'- uCGACGUGGGUauuGCGGCGUCG-CGACGc -3' miRNA: 3'- -GUUGCACUCGc--CGCCGCAGCaGCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 39441 | 0.76 | 0.324409 |
Target: 5'- gCAAa-UGAacGCGGaCGGCGUCGUCGACGg -3' miRNA: 3'- -GUUgcACU--CGCC-GCCGCAGCAGCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 108721 | 0.75 | 0.354603 |
Target: 5'- gAAUGUG-GCGGCGGCGgCGgCGACGa -3' miRNA: 3'- gUUGCACuCGCCGCCGCaGCaGCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 124925 | 0.75 | 0.386726 |
Target: 5'- gGugG-GGGCGGCGGCGgcggCGgcggCGACAg -3' miRNA: 3'- gUugCaCUCGCCGCCGCa---GCa---GCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 91702 | 0.74 | 0.395051 |
Target: 5'- aCAACGaUGGcGaCGGCGuCGUCGUCGACAg -3' miRNA: 3'- -GUUGC-ACU-C-GCCGCcGCAGCAGCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 118941 | 0.74 | 0.438362 |
Target: 5'- uUAACG---GCGGCGGCGUCGUCGuuGu -3' miRNA: 3'- -GUUGCacuCGCCGCCGCAGCAGCugU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 6380 | 0.73 | 0.456432 |
Target: 5'- gCGGCGgcGGCGGCGGCGacuacagCGUCGAUg -3' miRNA: 3'- -GUUGCacUCGCCGCCGCa------GCAGCUGu -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 102734 | 0.73 | 0.474895 |
Target: 5'- cCGGCGgcGGCGGCGGCGaCGagGACAa -3' miRNA: 3'- -GUUGCacUCGCCGCCGCaGCagCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 127954 | 0.73 | 0.493724 |
Target: 5'- gCGGCGgcGGCGGCGGCGUCGUaauuuUGAUu -3' miRNA: 3'- -GUUGCacUCGCCGCCGCAGCA-----GCUGu -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 15326 | 0.72 | 0.522583 |
Target: 5'- aCAACGacGGCGGCGGUGgCGgCGGCAa -3' miRNA: 3'- -GUUGCacUCGCCGCCGCaGCaGCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 1327 | 0.72 | 0.552069 |
Target: 5'- aGACGaUGAcgGCGGCGGCGgCGgCGGCGg -3' miRNA: 3'- gUUGC-ACU--CGCCGCCGCaGCaGCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 15985 | 0.71 | 0.602205 |
Target: 5'- gCAGCGUcGGCGGCGGUcacgacgacgcuGUCGUC-ACAc -3' miRNA: 3'- -GUUGCAcUCGCCGCCG------------CAGCAGcUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 21639 | 0.7 | 0.652873 |
Target: 5'- -uACGUGAGCGGCgccaGGUGggauccgcucgUGUCGGCGa -3' miRNA: 3'- guUGCACUCGCCG----CCGCa----------GCAGCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 96892 | 0.69 | 0.673082 |
Target: 5'- aCAAUGggcaucacCGGCaGCGUCGUCGACAc -3' miRNA: 3'- -GUUGCacuc----GCCGcCGCAGCAGCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 1177 | 0.69 | 0.683141 |
Target: 5'- gGACGaUGAGaacgauuGGCuGGCGUCGaCGACAg -3' miRNA: 3'- gUUGC-ACUCg------CCG-CCGCAGCaGCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 121121 | 0.69 | 0.687153 |
Target: 5'- ---gGUGGGCauguuggucaagGGCGGCGUCGagccguuuuacguauUCGACAu -3' miRNA: 3'- guugCACUCG------------CCGCCGCAGC---------------AGCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 59964 | 0.69 | 0.713035 |
Target: 5'- cCGACGUGGaCGGCGuCGcCGUCGAUu -3' miRNA: 3'- -GUUGCACUcGCCGCcGCaGCAGCUGu -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 39542 | 0.68 | 0.732642 |
Target: 5'- gCGGCGaUGAcGaCGGCGGUGcCGaUCGGCAa -3' miRNA: 3'- -GUUGC-ACU-C-GCCGCCGCaGC-AGCUGU- -5' |
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8494 | 5' | -57.2 | NC_002169.1 | + | 127028 | 0.68 | 0.761387 |
Target: 5'- gCAAgGUGAGUcucuuGCuGGCGUCuGUCGGCGa -3' miRNA: 3'- -GUUgCACUCGc----CG-CCGCAG-CAGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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