miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8494 5' -57.2 NC_002169.1 + 1974 0.79 0.234013
Target:  5'- uCGACGUGGGUauuGCGGCGUCG-CGACGc -3'
miRNA:   3'- -GUUGCACUCGc--CGCCGCAGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 60201 0.66 0.871338
Target:  5'- uGGCGauuuUGcucauuGCGGCGGCGaUGUCGAUg -3'
miRNA:   3'- gUUGC----ACu-----CGCCGCCGCaGCAGCUGu -5'
8494 5' -57.2 NC_002169.1 + 12505 0.66 0.832457
Target:  5'- --uUGUGuGGCuGGUGGCGgCGUUGACGg -3'
miRNA:   3'- guuGCAC-UCG-CCGCCGCaGCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 1555 0.67 0.824116
Target:  5'- uGGCGguGGCGGCGGUGgCGgCGGCGc -3'
miRNA:   3'- gUUGCacUCGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 43956 0.67 0.806929
Target:  5'- uGACGUGAGaCGGCacguuucgaacGuCGUCGUCGAa- -3'
miRNA:   3'- gUUGCACUC-GCCG-----------CcGCAGCAGCUgu -5'
8494 5' -57.2 NC_002169.1 + 34508 0.67 0.806929
Target:  5'- ----uUGcGGCGGCGGCGcCGUCGcCGa -3'
miRNA:   3'- guugcAC-UCGCCGCCGCaGCAGCuGU- -5'
8494 5' -57.2 NC_002169.1 + 117565 0.67 0.78912
Target:  5'- aAACGacaagaaGGCGGCGGCGaCGaCGACGa -3'
miRNA:   3'- gUUGCac-----UCGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 95979 0.68 0.780003
Target:  5'- aAACGUGAuggucGaCGGCGGCGacauguugUCGUgCGGCGa -3'
miRNA:   3'- gUUGCACU-----C-GCCGCCGC--------AGCA-GCUGU- -5'
8494 5' -57.2 NC_002169.1 + 59964 0.69 0.713035
Target:  5'- cCGACGUGGaCGGCGuCGcCGUCGAUu -3'
miRNA:   3'- -GUUGCACUcGCCGCcGCaGCAGCUGu -5'
8494 5' -57.2 NC_002169.1 + 121121 0.69 0.687153
Target:  5'- ---gGUGGGCauguuggucaagGGCGGCGUCGagccguuuuacguauUCGACAu -3'
miRNA:   3'- guugCACUCG------------CCGCCGCAGC---------------AGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 108721 0.75 0.354603
Target:  5'- gAAUGUG-GCGGCGGCGgCGgCGACGa -3'
miRNA:   3'- gUUGCACuCGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 124925 0.75 0.386726
Target:  5'- gGugG-GGGCGGCGGCGgcggCGgcggCGACAg -3'
miRNA:   3'- gUugCaCUCGCCGCCGCa---GCa---GCUGU- -5'
8494 5' -57.2 NC_002169.1 + 91702 0.74 0.395051
Target:  5'- aCAACGaUGGcGaCGGCGuCGUCGUCGACAg -3'
miRNA:   3'- -GUUGC-ACU-C-GCCGCcGCAGCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 102734 0.73 0.474895
Target:  5'- cCGGCGgcGGCGGCGGCGaCGagGACAa -3'
miRNA:   3'- -GUUGCacUCGCCGCCGCaGCagCUGU- -5'
8494 5' -57.2 NC_002169.1 + 127954 0.73 0.493724
Target:  5'- gCGGCGgcGGCGGCGGCGUCGUaauuuUGAUu -3'
miRNA:   3'- -GUUGCacUCGCCGCCGCAGCA-----GCUGu -5'
8494 5' -57.2 NC_002169.1 + 1327 0.72 0.552069
Target:  5'- aGACGaUGAcgGCGGCGGCGgCGgCGGCGg -3'
miRNA:   3'- gUUGC-ACU--CGCCGCCGCaGCaGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 96892 0.69 0.673082
Target:  5'- aCAAUGggcaucacCGGCaGCGUCGUCGACAc -3'
miRNA:   3'- -GUUGCacuc----GCCGcCGCAGCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 30478 1.08 0.002522
Target:  5'- gCAACGUGAGCGGCGGCGUCGUCGACAa -3'
miRNA:   3'- -GUUGCACUCGCCGCCGCAGCAGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 82861 0.66 0.856376
Target:  5'- -uGCGgcuGCGGCGGCGUUcuuuaacUCGGCGg -3'
miRNA:   3'- guUGCacuCGCCGCCGCAGc------AGCUGU- -5'
8494 5' -57.2 NC_002169.1 + 51188 0.66 0.848594
Target:  5'- gAACGUGAcgaGGUGGUGuUCGUCGcuGCGa -3'
miRNA:   3'- gUUGCACUcg-CCGCCGC-AGCAGC--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.