miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8500 3' -42.1 NC_002169.1 + 42291 0.73 0.999231
Target:  5'- gGAcGAAAGCAAAGAUugUGUuugACUu- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACA---UGAuu -5'
8500 3' -42.1 NC_002169.1 + 42349 0.88 0.614522
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAc -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 42418 0.9 0.501173
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 52698 0.77 0.977996
Target:  5'- gGAcGAAAGCAAAGAUcaUGUACUAGa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 52816 0.98 0.211877
Target:  5'- uCGAUGAAAGCAAAGAUGgUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAUgACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 52824 0.76 0.992638
Target:  5'- uCGAUGAAAGCAAAcAUcgUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUcUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 52933 0.74 0.998201
Target:  5'- uCGAUGAAAGCAAAGAUugaGUAUg-- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugaCAUGauu -5'
8500 3' -42.1 NC_002169.1 + 52942 0.68 0.999997
Target:  5'- gGAcGAAAGCAAAGAUcgUGUACc-- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGauu -5'
8500 3' -42.1 NC_002169.1 + 53060 0.91 0.447921
Target:  5'- gGAUGAAAGCAAAGAUGaUGUACUAAa -3'
miRNA:   3'- gCUACUUUCGUUUCUAUgACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 53076 0.73 0.999039
Target:  5'- gGAcGAAAGCAAAGAUcaUGUAUUGAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 53156 0.78 0.965415
Target:  5'- gGAcGAAAGCAAAGAUcaUGUACUGAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 53203 0.9 0.534428
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAGa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 53283 0.8 0.926785
Target:  5'- uCGAcGAAAGCAAAGAUcaUGUACUGAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 64392 0.66 1
Target:  5'- aCGAauUGaAAAGCAAAGGUugcguGCUcGUGCUGu -3'
miRNA:   3'- -GCU--AC-UUUCGUUUCUA-----UGA-CAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 71670 0.77 0.977996
Target:  5'- gGAcGAAAGCAAAGAUcaUGUACUAGa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 71796 0.9 0.490289
Target:  5'- uCGAUGAAAGCAAAGAUcgUGUACUGAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 104869 0.66 1
Target:  5'- gGAcGAAAGCAAAGAUcgaguagGCUGaUGCa-- -3'
miRNA:   3'- gCUaCUUUCGUUUCUA-------UGAC-AUGauu -5'
8500 3' -42.1 NC_002169.1 + 104926 0.75 0.995477
Target:  5'- uCGAcGAAAGCAAAGAUcaUGUAUUGAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 104988 0.83 0.851535
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUGCg-- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGauu -5'
8500 3' -42.1 NC_002169.1 + 104996 0.9 0.501173
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.