miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8500 3' -42.1 NC_002169.1 + 10551 0.86 0.718052
Target:  5'- aGAUGAAAGCAAAcAUugUGUACUAAa -3'
miRNA:   3'- gCUACUUUCGUUUcUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 10678 0.75 0.99371
Target:  5'- uCGAUGAAAGCAAAGAU-C-GUugUGGg -3'
miRNA:   3'- -GCUACUUUCGUUUCUAuGaCAugAUU- -5'
8500 3' -42.1 NC_002169.1 + 10742 0.8 0.932666
Target:  5'- uCGAcGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 10850 0.9 0.501173
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 11069 0.79 0.948477
Target:  5'- uCGAcGAAAGCAAAGAUcaUGUACUAGa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 11096 0.68 0.999997
Target:  5'- gGAcGAAAGCAAAGAUcgUGUACc-- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGauu -5'
8500 3' -42.1 NC_002169.1 + 11196 0.71 0.999827
Target:  5'- gGAcGAAAGCAAAGAU-CgaGUACUAGa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAuGa-CAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 11204 0.73 0.999231
Target:  5'- gGAcGAAAGCAAAGAUcaUGUAUUAAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 11316 0.78 0.972217
Target:  5'- uCGAcGAAAGCAAAGAUcgUGUACUAu -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 11331 0.66 1
Target:  5'- uCGAcGAAAGCAAAGAU-C-GUGCa-- -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAuGaCAUGauu -5'
8500 3' -42.1 NC_002169.1 + 11444 0.96 0.263914
Target:  5'- uCGAUGAAAGCAAAGAUugUGUAUUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 11475 0.75 0.995477
Target:  5'- uCGAUGAAAGCAAAcAUcaUGUACUAGa -3'
miRNA:   3'- -GCUACUUUCGUUUcUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 11602 0.76 0.990061
Target:  5'- gGAcGAAAGCAAAGAUcgUGUACUAu -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 11604 0.71 0.999927
Target:  5'- gGAcGAAAGCAAAGAUcgUGUAUUAu -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 11731 0.83 0.823647
Target:  5'- uCGAUGAAAGCAAAGAU-CgaGUACUAGa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAuGa-CAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 25146 0.66 1
Target:  5'- aCGGUGAAga-GAAGGUACUG-GCUAc -3'
miRNA:   3'- -GCUACUUucgUUUCUAUGACaUGAUu -5'
8500 3' -42.1 NC_002169.1 + 42030 0.79 0.961609
Target:  5'- uCGAUGAAAGCAAAGAUcgUGUAUg-- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGauu -5'
8500 3' -42.1 NC_002169.1 + 42032 0.76 0.990061
Target:  5'- gGAcGAAAGCAAAGAUcgUGUACUAu -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 42158 0.89 0.557026
Target:  5'- aGAUGAAAGCAAAGAUcgUGUACUGAa -3'
miRNA:   3'- gCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 42222 0.71 0.999927
Target:  5'- gGAcGAAAGCAAAGAUugUGUuugGAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAugaUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.