miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8500 3' -42.1 NC_002169.1 + 120199 0.78 0.968948
Target:  5'- gGAcGAAAGCAAAGAUcgUGUACUAAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 120072 0.72 0.999518
Target:  5'- uCGAcGAAAGCAAAGAUcgUGUAUUAc -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 119761 0.8 0.926785
Target:  5'- uCGAcGAAAGCAAAGAUcgUGUACUGAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 119635 0.68 0.999997
Target:  5'- gGAcGAAAGCAAAGAUcgUGUACc-- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGauu -5'
8500 3' -42.1 NC_002169.1 + 119580 0.78 0.968948
Target:  5'- gGAcGAAAGCAAAGAUcgUGUACUAAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 119453 0.9 0.501173
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 119355 0.76 0.992638
Target:  5'- uCGAUaAAAGCAAAGAUcgUGUACUAAa -3'
miRNA:   3'- -GCUAcUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 118887 0.67 1
Target:  5'- uCGAUGAGAGCcuguAGAUcgGCcgugaauuguUGUGCUGAc -3'
miRNA:   3'- -GCUACUUUCGuu--UCUA--UG----------ACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 105660 0.75 0.99371
Target:  5'- gGAcGAAAGCAAAGAUcgUGUACUGu -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 105569 0.83 0.842481
Target:  5'- gGAUGAAAGCAAAGAUcgUGUAUUAAa -3'
miRNA:   3'- gCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 105533 0.82 0.860333
Target:  5'- uCGAUGAAAGCAAAGAUcgUGUAUUAc -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 105481 0.69 0.999995
Target:  5'- gGAcGAAAGCAAAcAUugUGUACUu- -3'
miRNA:   3'- gCUaCUUUCGUUUcUAugACAUGAuu -5'
8500 3' -42.1 NC_002169.1 + 105442 0.8 0.932666
Target:  5'- uCGAcGAAAGCAAAGAUugUGUAUg-- -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGauu -5'
8500 3' -42.1 NC_002169.1 + 105355 0.67 1
Target:  5'- gGAUGAAAGCAAAcAUGaUGUACc-- -3'
miRNA:   3'- gCUACUUUCGUUUcUAUgACAUGauu -5'
8500 3' -42.1 NC_002169.1 + 105254 0.9 0.501173
Target:  5'- uCGAUGAAAGCAAAGAUcgUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 105237 0.8 0.932666
Target:  5'- uCGAcGAAAGCAAAGAUcgUGUACUAAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 105130 0.75 0.994652
Target:  5'- ---cGAAAGCAAAGAUcaUGUACUAGa -3'
miRNA:   3'- gcuaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 105115 0.78 0.965415
Target:  5'- gGAcGAAAGCAAAGAUcaUGUACUGAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 104996 0.9 0.501173
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 104988 0.83 0.851535
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUGCg-- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.