miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8500 3' -42.1 NC_002169.1 + 11204 0.73 0.999231
Target:  5'- gGAcGAAAGCAAAGAUcaUGUAUUAAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 52698 0.77 0.977996
Target:  5'- gGAcGAAAGCAAAGAUcaUGUACUAGa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 71670 0.77 0.977996
Target:  5'- gGAcGAAAGCAAAGAUcaUGUACUAGa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 42032 0.76 0.990061
Target:  5'- gGAcGAAAGCAAAGAUcgUGUACUAu -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 119355 0.76 0.992638
Target:  5'- uCGAUaAAAGCAAAGAUcgUGUACUAAa -3'
miRNA:   3'- -GCUAcUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 105130 0.75 0.994652
Target:  5'- ---cGAAAGCAAAGAUcaUGUACUAGa -3'
miRNA:   3'- gcuaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 11475 0.75 0.995477
Target:  5'- uCGAUGAAAGCAAAcAUcaUGUACUAGa -3'
miRNA:   3'- -GCUACUUUCGUUUcUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 52933 0.74 0.998201
Target:  5'- uCGAUGAAAGCAAAGAUugaGUAUg-- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugaCAUGauu -5'
8500 3' -42.1 NC_002169.1 + 53076 0.73 0.999039
Target:  5'- gGAcGAAAGCAAAGAUcaUGUAUUGAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 11316 0.78 0.972217
Target:  5'- uCGAcGAAAGCAAAGAUcgUGUACUAu -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 53156 0.78 0.965415
Target:  5'- gGAcGAAAGCAAAGAUcaUGUACUGAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 11069 0.79 0.948477
Target:  5'- uCGAcGAAAGCAAAGAUcaUGUACUAGa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 10850 0.9 0.501173
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 119453 0.9 0.501173
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 10551 0.86 0.718052
Target:  5'- aGAUGAAAGCAAAcAUugUGUACUAAa -3'
miRNA:   3'- gCUACUUUCGUUUcUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 104988 0.83 0.851535
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUGCg-- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGauu -5'
8500 3' -42.1 NC_002169.1 + 105533 0.82 0.860333
Target:  5'- uCGAUGAAAGCAAAGAUcgUGUAUUAc -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 10742 0.8 0.932666
Target:  5'- uCGAcGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 105237 0.8 0.932666
Target:  5'- uCGAcGAAAGCAAAGAUcgUGUACUAAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 105442 0.8 0.932666
Target:  5'- uCGAcGAAAGCAAAGAUugUGUAUg-- -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.