miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8500 3' -42.1 NC_002169.1 + 52816 0.98 0.211877
Target:  5'- uCGAUGAAAGCAAAGAUGgUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAUgACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 11444 0.96 0.263914
Target:  5'- uCGAUGAAAGCAAAGAUugUGUAUUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 53060 0.91 0.447921
Target:  5'- gGAUGAAAGCAAAGAUGaUGUACUAAa -3'
miRNA:   3'- gCUACUUUCGUUUCUAUgACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 71796 0.9 0.490289
Target:  5'- uCGAUGAAAGCAAAGAUcgUGUACUGAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 104996 0.9 0.501173
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 42418 0.9 0.501173
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 105254 0.9 0.501173
Target:  5'- uCGAUGAAAGCAAAGAUcgUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 119453 0.9 0.501173
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 10850 0.9 0.501173
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 53203 0.9 0.534428
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAGa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 42158 0.89 0.557026
Target:  5'- aGAUGAAAGCAAAGAUcgUGUACUGAa -3'
miRNA:   3'- gCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 42349 0.88 0.614522
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUACUAc -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 10551 0.86 0.718052
Target:  5'- aGAUGAAAGCAAAcAUugUGUACUAAa -3'
miRNA:   3'- gCUACUUUCGUUUcUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 11731 0.83 0.823647
Target:  5'- uCGAUGAAAGCAAAGAU-CgaGUACUAGa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAuGa-CAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 105569 0.83 0.842481
Target:  5'- gGAUGAAAGCAAAGAUcgUGUAUUAAa -3'
miRNA:   3'- gCUACUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 104988 0.83 0.851535
Target:  5'- uCGAUGAAAGCAAAGAUcaUGUGCg-- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGauu -5'
8500 3' -42.1 NC_002169.1 + 105533 0.82 0.860333
Target:  5'- uCGAUGAAAGCAAAGAUcgUGUAUUAc -3'
miRNA:   3'- -GCUACUUUCGUUUCUAugACAUGAUu -5'
8500 3' -42.1 NC_002169.1 + 53283 0.8 0.926785
Target:  5'- uCGAcGAAAGCAAAGAUcaUGUACUGAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 119761 0.8 0.926785
Target:  5'- uCGAcGAAAGCAAAGAUcgUGUACUGAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUU- -5'
8500 3' -42.1 NC_002169.1 + 10742 0.8 0.932666
Target:  5'- uCGAcGAAAGCAAAGAUcaUGUACUAAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAugACAUGAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.