miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8503 5' -57.1 NC_002169.1 + 58969 0.66 0.87371
Target:  5'- cGCGAcagCcuGCGcGCGCUCaCCGacgacguugaucGCGUCGCCc -3'
miRNA:   3'- -CGUUa--G--UGC-CGCGAG-GGU------------UGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 97257 0.66 0.87371
Target:  5'- gGCGAgaagaaaGcCGUUCUCGACGCCGCUg -3'
miRNA:   3'- -CGUUagug---CcGCGAGGGUUGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 108422 0.66 0.87371
Target:  5'- aCAAUCAaCGGgacgugcuguuCGCUCgCGACGUguaCGCCa -3'
miRNA:   3'- cGUUAGU-GCC-----------GCGAGgGUUGCG---GCGG- -5'
8503 5' -57.1 NC_002169.1 + 15659 0.66 0.87371
Target:  5'- ----cCGCGGCacaGCUCaucGCGCCGCUg -3'
miRNA:   3'- cguuaGUGCCG---CGAGgguUGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 72462 0.66 0.866379
Target:  5'- gGCGuuuucGUCGuCGuaGUUCUCAAUGUCGCCc -3'
miRNA:   3'- -CGU-----UAGU-GCcgCGAGGGUUGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 128115 0.66 0.858841
Target:  5'- -aAAUUACGaCGC-CgCCGcCGCCGCCg -3'
miRNA:   3'- cgUUAGUGCcGCGaG-GGUuGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 106487 0.66 0.858076
Target:  5'- cGCGc-CACGGUucauccguggGCUCCCAAUcggacagGCCGCa -3'
miRNA:   3'- -CGUuaGUGCCG----------CGAGGGUUG-------CGGCGg -5'
8503 5' -57.1 NC_002169.1 + 129078 0.66 0.8511
Target:  5'- cGCAGUCGuagggaucCGGUGCgagUCCGugauaGCCGCUc -3'
miRNA:   3'- -CGUUAGU--------GCCGCGa--GGGUug---CGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 58878 0.66 0.843163
Target:  5'- uCGAUCAacuacuauCGGCGCcgaCGACGCCGUa -3'
miRNA:   3'- cGUUAGU--------GCCGCGaggGUUGCGGCGg -5'
8503 5' -57.1 NC_002169.1 + 42815 0.66 0.843163
Target:  5'- cGUAGUCaaagGCGGCGC-CgCGAuCGCUGUCc -3'
miRNA:   3'- -CGUUAG----UGCCGCGaGgGUU-GCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 111836 0.66 0.835037
Target:  5'- cGCGuUCACGGCcaUCgCCAGCGUCGaCg -3'
miRNA:   3'- -CGUuAGUGCCGcgAG-GGUUGCGGCgG- -5'
8503 5' -57.1 NC_002169.1 + 22583 0.67 0.826728
Target:  5'- uCGGUguCGuCGCUCaCGACGCCGCUc -3'
miRNA:   3'- cGUUAguGCcGCGAGgGUUGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 99786 0.67 0.826728
Target:  5'- -aGAUCAUGGCGUacaaucUCCuCGGCGgCCGUUu -3'
miRNA:   3'- cgUUAGUGCCGCG------AGG-GUUGC-GGCGG- -5'
8503 5' -57.1 NC_002169.1 + 110576 0.67 0.826728
Target:  5'- aGCGuuUCGCGuGUGggUCCGAaugguCGCCGCCg -3'
miRNA:   3'- -CGUu-AGUGC-CGCgaGGGUU-----GCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 19919 0.67 0.818245
Target:  5'- cGCAugauuAUCuuGGCGCg-UUAACGCCGCg -3'
miRNA:   3'- -CGU-----UAGugCCGCGagGGUUGCGGCGg -5'
8503 5' -57.1 NC_002169.1 + 104164 0.67 0.782724
Target:  5'- aGCGcAUCGCGGaCGauggUCUCGuCGCCGUCa -3'
miRNA:   3'- -CGU-UAGUGCC-GCg---AGGGUuGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 107108 0.67 0.782724
Target:  5'- uGCAcauuAUUAUGGCGa---CGACGCCGUCa -3'
miRNA:   3'- -CGU----UAGUGCCGCgaggGUUGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 123556 0.68 0.773488
Target:  5'- gGCAgGUCGCGGUacaauugccuGUUUaCCGuCGCCGCCa -3'
miRNA:   3'- -CGU-UAGUGCCG----------CGAG-GGUuGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 22212 0.68 0.764128
Target:  5'- ---uUCGCGGuCGCgUUCC-GCGUCGCCc -3'
miRNA:   3'- cguuAGUGCC-GCG-AGGGuUGCGGCGG- -5'
8503 5' -57.1 NC_002169.1 + 102181 0.68 0.764128
Target:  5'- ---cUCGCGGCGuCUacaCCAACGCCa-- -3'
miRNA:   3'- cguuAGUGCCGC-GAg--GGUUGCGGcgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.