miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8505 5' -44.2 NC_002169.1 + 42158 0.93 0.274439
Target:  5'- -aGAUGAAAGCAAAgAUCGUGUACUGa -3'
miRNA:   3'- agCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 42350 0.87 0.521315
Target:  5'- cUCGAUGAAAGCAAAgAUCaUGUACUAc -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 42419 0.88 0.478654
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 52698 0.71 0.998843
Target:  5'- -gGAcGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 52815 0.92 0.312164
Target:  5'- cUCGAUGAAAGCAAAgAUgGUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAgCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 52825 1.09 0.033323
Target:  5'- uUCGAUGAAAGCAAACAUCGUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUGUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 52932 0.75 0.974087
Target:  5'- cUCGAUGAAAGCAAAgAUUGaGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCaCAUGau -5'
8505 5' -44.2 NC_002169.1 + 52942 0.76 0.95636
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 53060 0.73 0.993058
Target:  5'- -gGAUGAAAGCAAAgAUgaUGUACUAa -3'
miRNA:   3'- agCUACUUUCGUUUgUAgcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 53156 0.7 0.999399
Target:  5'- -gGAcGAAAGCAAAgAUCaUGUACUGa -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 53204 0.88 0.478654
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 53284 0.77 0.931773
Target:  5'- gUCGAcGAAAGCAAAgAUCaUGUACUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 71670 0.71 0.998843
Target:  5'- -gGAcGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 71797 1 0.119596
Target:  5'- cUCGAUGAAAGCAAAgAUCGUGUACUGa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 80401 0.66 0.999994
Target:  5'- aCGAUGGguuucguGAGC-GGCAUCGUGaGCa- -3'
miRNA:   3'- aGCUACU-------UUCGuUUGUAGCACaUGau -5'
8505 5' -44.2 NC_002169.1 + 93450 0.67 0.999989
Target:  5'- gUCGAUGAAGGUcuGCAguaUGUGCa- -3'
miRNA:   3'- -AGCUACUUUCGuuUGUagcACAUGau -5'
8505 5' -44.2 NC_002169.1 + 95572 0.68 0.999944
Target:  5'- gUCGAUGAGA-CcGGCGUCGUGUuuUGa -3'
miRNA:   3'- -AGCUACUUUcGuUUGUAGCACAugAU- -5'
8505 5' -44.2 NC_002169.1 + 97066 0.67 0.999978
Target:  5'- aUCGAcGAuc-CGAACGUUGUGUACa- -3'
miRNA:   3'- -AGCUaCUuucGUUUGUAGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 104927 0.72 0.995709
Target:  5'- gUCGAcGAAAGCAAAgAUCaUGUAUUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 104987 0.83 0.733511
Target:  5'- uUCGAUGAAAGCAAAgAUCaUGUGCg- -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.