miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8505 5' -44.2 NC_002169.1 + 9601 0.66 0.999996
Target:  5'- aCGAUGggGGUAAugAaaaauucaaagUCGUGUGu-- -3'
miRNA:   3'- aGCUACuuUCGUUugU-----------AGCACAUgau -5'
8505 5' -44.2 NC_002169.1 + 10551 0.98 0.154686
Target:  5'- -aGAUGAAAGCAAACAUUGUGUACUAa -3'
miRNA:   3'- agCUACUUUCGUUUGUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 10679 0.79 0.877385
Target:  5'- gUCGAUGAAAGCAAAgAUCGUuGUGg-- -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCA-CAUgau -5'
8505 5' -44.2 NC_002169.1 + 10741 0.78 0.913535
Target:  5'- uUCGAcGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 10849 0.88 0.478654
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 10880 0.66 0.999992
Target:  5'- gUCGAaGAucuuggacgAAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- -AGCUaCU---------UUCGUUUgUAGCaCAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 10978 1 0.123096
Target:  5'- cUCGAcGAAAGCAAACAUCGUGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUGUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11068 0.78 0.913535
Target:  5'- uUCGAcGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11096 0.76 0.95636
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 11196 0.72 0.996381
Target:  5'- -gGAcGAAAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCaCAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11315 0.9 0.362458
Target:  5'- uUCGAcGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11332 0.71 0.9979
Target:  5'- gUCGAcGAAAGCAAAgAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGCACau---GAU- -5'
8505 5' -44.2 NC_002169.1 + 11445 0.91 0.353696
Target:  5'- gUCGAUGAAAGCAAAgAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11474 0.97 0.178002
Target:  5'- gUCGAUGAAAGCAAACAUCaUGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUGUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11602 0.83 0.71161
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11604 0.78 0.919906
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11732 0.89 0.418109
Target:  5'- gUCGAUGAAAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCaCAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 41801 0.7 0.999399
Target:  5'- cUCGAUGAAcGCAAACAUUGaaUAUUGc -3'
miRNA:   3'- -AGCUACUUuCGUUUGUAGCacAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 42031 0.91 0.32832
Target:  5'- cUCGAUGAAAGCAAAgAUCGUGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 42032 0.83 0.71161
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.