miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8505 5' -44.2 NC_002169.1 + 71670 0.71 0.998843
Target:  5'- -gGAcGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 10741 0.78 0.913535
Target:  5'- uUCGAcGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11068 0.78 0.913535
Target:  5'- uUCGAcGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11604 0.78 0.919906
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105441 0.77 0.937267
Target:  5'- uUCGAcGAAAGCAAAgAUUGUGUAUg- -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 119635 0.76 0.95636
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 52932 0.75 0.974087
Target:  5'- cUCGAUGAAAGCAAAgAUUGaGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCaCAUGau -5'
8505 5' -44.2 NC_002169.1 + 105355 0.74 0.981804
Target:  5'- -gGAUGAAAGCAAACAUgaUGUACc- -3'
miRNA:   3'- agCUACUUUCGUUUGUAgcACAUGau -5'
8505 5' -44.2 NC_002169.1 + 52698 0.71 0.998843
Target:  5'- -gGAcGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 104987 0.83 0.733511
Target:  5'- uUCGAUGAAAGCAAAgAUCaUGUGCg- -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGau -5'
8505 5' -44.2 NC_002169.1 + 42032 0.83 0.71161
Target:  5'- -gGAcGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- agCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 120071 0.85 0.610342
Target:  5'- uUCGAcGAAAGCAAAgAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11474 0.97 0.178002
Target:  5'- gUCGAUGAAAGCAAACAUCaUGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUGUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105532 0.95 0.221796
Target:  5'- uUCGAUGAAAGCAAAgAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 52815 0.92 0.312164
Target:  5'- cUCGAUGAAAGCAAAgAUgGUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAgCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105236 0.91 0.345086
Target:  5'- gUCGAcGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11315 0.9 0.362458
Target:  5'- uUCGAcGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 10849 0.88 0.478654
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 119452 0.88 0.478654
Target:  5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 119354 0.87 0.532216
Target:  5'- uUCGAUaAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- -AGCUAcUUUCGUUUgUAGCACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.