miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8505 5' -44.2 NC_002169.1 + 52825 1.09 0.033323
Target:  5'- uUCGAUGAAAGCAAACAUCGUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUGUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105255 1.01 0.106505
Target:  5'- uUCGAUGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 71797 1 0.119596
Target:  5'- cUCGAUGAAAGCAAAgAUCGUGUACUGa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 10978 1 0.123096
Target:  5'- cUCGAcGAAAGCAAACAUCGUGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUGUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 10551 0.98 0.154686
Target:  5'- -aGAUGAAAGCAAACAUUGUGUACUAa -3'
miRNA:   3'- agCUACUUUCGUUUGUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11474 0.97 0.178002
Target:  5'- gUCGAUGAAAGCAAACAUCaUGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUGUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105532 0.95 0.221796
Target:  5'- uUCGAUGAAAGCAAAgAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 42158 0.93 0.274439
Target:  5'- -aGAUGAAAGCAAAgAUCGUGUACUGa -3'
miRNA:   3'- agCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 52815 0.92 0.312164
Target:  5'- cUCGAUGAAAGCAAAgAUgGUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAgCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 42031 0.91 0.32832
Target:  5'- cUCGAUGAAAGCAAAgAUCGUGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCACAUGau -5'
8505 5' -44.2 NC_002169.1 + 105236 0.91 0.345086
Target:  5'- gUCGAcGAAAGCAAAgAUCGUGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11445 0.91 0.353696
Target:  5'- gUCGAUGAAAGCAAAgAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11315 0.9 0.362458
Target:  5'- uUCGAcGAAAGCAAAgAUCGUGUACUAu -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 119762 0.9 0.371368
Target:  5'- uUCGAcGAAAGCAAAgAUCGUGUACUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 11732 0.89 0.418109
Target:  5'- gUCGAUGAAAGCAAAgAUCGaGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGCaCAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 105569 0.88 0.468255
Target:  5'- -gGAUGAAAGCAAAgAUCGUGUAUUAa -3'
miRNA:   3'- agCUACUUUCGUUUgUAGCACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 119452 0.88 0.478654
Target:  5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 53204 0.88 0.478654
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 104997 0.88 0.478654
Target:  5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5'
8505 5' -44.2 NC_002169.1 + 10849 0.88 0.478654
Target:  5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.