Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8505 | 5' | -44.2 | NC_002169.1 | + | 105236 | 0.91 | 0.345086 |
Target: 5'- gUCGAcGAAAGCAAAgAUCGUGUACUAa -3' miRNA: 3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 11315 | 0.9 | 0.362458 |
Target: 5'- uUCGAcGAAAGCAAAgAUCGUGUACUAu -3' miRNA: 3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 10849 | 0.88 | 0.478654 |
Target: 5'- gUCGAUGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 119452 | 0.88 | 0.478654 |
Target: 5'- uUCGAUGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 10741 | 0.78 | 0.913535 |
Target: 5'- uUCGAcGAAAGCAAAgAUCaUGUACUAa -3' miRNA: 3'- -AGCUaCUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 104987 | 0.83 | 0.733511 |
Target: 5'- uUCGAUGAAAGCAAAgAUCaUGUGCg- -3' miRNA: 3'- -AGCUACUUUCGUUUgUAGcACAUGau -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 42032 | 0.83 | 0.71161 |
Target: 5'- -gGAcGAAAGCAAAgAUCGUGUACUAu -3' miRNA: 3'- agCUaCUUUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 120071 | 0.85 | 0.610342 |
Target: 5'- uUCGAcGAAAGCAAAgAUCGUGUAUUAc -3' miRNA: 3'- -AGCUaCUUUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 119354 | 0.87 | 0.532216 |
Target: 5'- uUCGAUaAAAGCAAAgAUCGUGUACUAa -3' miRNA: 3'- -AGCUAcUUUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 53060 | 0.73 | 0.993058 |
Target: 5'- -gGAUGAAAGCAAAgAUgaUGUACUAa -3' miRNA: 3'- agCUACUUUCGUUUgUAgcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 105376 | 0.73 | 0.994057 |
Target: 5'- gUCGAcGAucuuggacaaAAGCAAAgAUCGUGUAUUAa -3' miRNA: 3'- -AGCUaCU----------UUCGUUUgUAGCACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 104927 | 0.72 | 0.995709 |
Target: 5'- gUCGAcGAAAGCAAAgAUCaUGUAUUGa -3' miRNA: 3'- -AGCUaCUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 11196 | 0.72 | 0.996381 |
Target: 5'- -gGAcGAAAGCAAAgAUCGaGUACUAg -3' miRNA: 3'- agCUaCUUUCGUUUgUAGCaCAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 11332 | 0.71 | 0.9979 |
Target: 5'- gUCGAcGAAAGCAAAgAUCGUGcauuuCUGc -3' miRNA: 3'- -AGCUaCUUUCGUUUgUAGCACau---GAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 105115 | 0.7 | 0.999399 |
Target: 5'- -gGAcGAAAGCAAAgAUCaUGUACUGa -3' miRNA: 3'- agCUaCUUUCGUUUgUAGcACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 118888 | 0.69 | 0.999707 |
Target: 5'- aUCGAUGAGAGCcuguAgAUCGgccgugaauuguUGUGCUGa -3' miRNA: 3'- -AGCUACUUUCGuu--UgUAGC------------ACAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 10880 | 0.66 | 0.999992 |
Target: 5'- gUCGAaGAucuuggacgAAGCAAAgAUCGaGUACUAg -3' miRNA: 3'- -AGCUaCU---------UUCGUUUgUAGCaCAUGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 80401 | 0.66 | 0.999994 |
Target: 5'- aCGAUGGguuucguGAGC-GGCAUCGUGaGCa- -3' miRNA: 3'- aGCUACU-------UUCGuUUGUAGCACaUGau -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 117283 | 0.66 | 0.999995 |
Target: 5'- uUUGAUGAGAuuccACAUCGUGUgGCUAu -3' miRNA: 3'- -AGCUACUUUcguuUGUAGCACA-UGAU- -5' |
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8505 | 5' | -44.2 | NC_002169.1 | + | 52825 | 1.09 | 0.033323 |
Target: 5'- uUCGAUGAAAGCAAACAUCGUGUACUAa -3' miRNA: 3'- -AGCUACUUUCGUUUGUAGCACAUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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