Results 21 - 40 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8506 | 5' | -44.5 | NC_002169.1 | + | 118888 | 0.81 | 0.798904 |
Target: 5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3' miRNA: 3'- -AGCUACUUUCGuu--UCUAGC------------ACAUGAC- -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 53156 | 0.82 | 0.768645 |
Target: 5'- -gGAcGAAAGCAAAGAUCaUGUACUGa -3' miRNA: 3'- agCUaCUUUCGUUUCUAGcACAUGAC- -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 105115 | 0.82 | 0.768645 |
Target: 5'- -gGAcGAAAGCAAAGAUCaUGUACUGa -3' miRNA: 3'- agCUaCUUUCGUUUCUAGcACAUGAC- -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 11332 | 0.82 | 0.747723 |
Target: 5'- gUCGAcGAAAGCAAAGAUCGUGcauuuCUGc -3' miRNA: 3'- -AGCUaCUUUCGUUUCUAGCACau---GAC- -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 10978 | 0.83 | 0.715457 |
Target: 5'- cUCGAcGAAAGCAAAcAUCGUGUACUa -3' miRNA: 3'- -AGCUaCUUUCGUUUcUAGCACAUGAc -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 52932 | 0.84 | 0.671296 |
Target: 5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3' miRNA: 3'- -AGCUACUUUCGUUUCUAGCaCAUGac -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 104927 | 0.84 | 0.660132 |
Target: 5'- gUCGAcGAAAGCAAAGAUCaUGUAUUGa -3' miRNA: 3'- -AGCUaCUUUCGUUUCUAGcACAUGAC- -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 11068 | 0.84 | 0.648939 |
Target: 5'- uUCGAcGAAAGCAAAGAUCaUGUACUa -3' miRNA: 3'- -AGCUaCUUUCGUUUCUAGcACAUGAc -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 10741 | 0.84 | 0.648939 |
Target: 5'- uUCGAcGAAAGCAAAGAUCaUGUACUa -3' miRNA: 3'- -AGCUaCUUUCGUUUCUAGcACAUGAc -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 11604 | 0.84 | 0.637731 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUAUUa -3' miRNA: 3'- agCUaCUUUCGUUUCUAGCACAUGAc -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 119635 | 0.85 | 0.61531 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- agCUaCUUUCGUUUCUAGCACAUGac -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 11096 | 0.85 | 0.61531 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- agCUaCUUUCGUUUCUAGCACAUGac -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 52942 | 0.85 | 0.61531 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- agCUaCUUUCGUUUCUAGCACAUGac -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 105441 | 0.86 | 0.570726 |
Target: 5'- uUCGAcGAAAGCAAAGAUUGUGUAUg- -3' miRNA: 3'- -AGCUaCUUUCGUUUCUAGCACAUGac -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 10679 | 0.88 | 0.474163 |
Target: 5'- gUCGAUGAAAGCAAAGAUCGUuGUGg-- -3' miRNA: 3'- -AGCUACUUUCGUUUCUAGCA-CAUgac -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 53284 | 0.89 | 0.414525 |
Target: 5'- gUCGAcGAAAGCAAAGAUCaUGUACUGa -3' miRNA: 3'- -AGCUaCUUUCGUUUCUAGcACAUGAC- -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 11602 | 0.9 | 0.395691 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACUa -3' miRNA: 3'- agCUaCUUUCGUUUCUAGCACAUGAc -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 120199 | 0.9 | 0.395691 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACUa -3' miRNA: 3'- agCUaCUUUCGUUUCUAGCACAUGAc -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 42032 | 0.9 | 0.395691 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACUa -3' miRNA: 3'- agCUaCUUUCGUUUCUAGCACAUGAc -5' |
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8506 | 5' | -44.5 | NC_002169.1 | + | 119580 | 0.9 | 0.395691 |
Target: 5'- -gGAcGAAAGCAAAGAUCGUGUACUa -3' miRNA: 3'- agCUaCUUUCGUUUCUAGCACAUGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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