miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8506 5' -44.5 NC_002169.1 + 42158 1.05 0.063253
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- agCUACUUUCGUUUCUAGCACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 42222 0.73 0.989129
Target:  5'- -gGAcGAAAGCAAAGAUUGUGU-UUGg -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAuGAC- -5'
8506 5' -44.5 NC_002169.1 + 42291 0.73 0.989129
Target:  5'- -gGAcGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACA---UGAc -5'
8506 5' -44.5 NC_002169.1 + 42350 0.94 0.252468
Target:  5'- cUCGAUGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 42419 0.94 0.245909
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 52698 0.77 0.942865
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 52815 0.98 0.150456
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAgCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 52825 0.93 0.280148
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 52932 0.84 0.671296
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCaCAUGac -5'
8506 5' -44.5 NC_002169.1 + 52942 0.85 0.61531
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGac -5'
8506 5' -44.5 NC_002169.1 + 53060 0.79 0.878796
Target:  5'- -gGAUGAAAGCAAAGAUgaUGUACUa -3'
miRNA:   3'- agCUACUUUCGUUUCUAgcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 53076 0.77 0.947709
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 53156 0.82 0.768645
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 53204 0.94 0.245909
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 53284 0.89 0.414525
Target:  5'- gUCGAcGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 64392 0.69 0.999687
Target:  5'- aCGAauUGaAAAGCAAAGGUUGcGUGCUc -3'
miRNA:   3'- aGCU--AC-UUUCGUUUCUAGCaCAUGAc -5'
8506 5' -44.5 NC_002169.1 + 71670 0.77 0.942865
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 71797 1.11 0.025845
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 80180 0.67 0.999966
Target:  5'- gUCGAUGAcguuguuuauuaAAGCGuuGAUCaUGUGCa- -3'
miRNA:   3'- -AGCUACU------------UUCGUuuCUAGcACAUGac -5'
8506 5' -44.5 NC_002169.1 + 104869 0.75 0.979399
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCA--UGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.