miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8506 5' -44.5 NC_002169.1 + 10551 0.81 0.798904
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUa -3'
miRNA:   3'- agCUACUUUCGUUUcUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 10679 0.88 0.474163
Target:  5'- gUCGAUGAAAGCAAAGAUCGUuGUGg-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCA-CAUgac -5'
8506 5' -44.5 NC_002169.1 + 10741 0.84 0.648939
Target:  5'- uUCGAcGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 10849 0.94 0.245909
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 10880 0.73 0.992949
Target:  5'- gUCGAaGAucuuggacgAAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- -AGCUaCU---------UUCGUUUCUAGCaCAUGAc -5'
8506 5' -44.5 NC_002169.1 + 10978 0.83 0.715457
Target:  5'- cUCGAcGAAAGCAAAcAUCGUGUACUa -3'
miRNA:   3'- -AGCUaCUUUCGUUUcUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11068 0.84 0.648939
Target:  5'- uUCGAcGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11096 0.85 0.61531
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGac -5'
8506 5' -44.5 NC_002169.1 + 11196 0.78 0.907812
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11204 0.72 0.996881
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUAUUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11315 0.97 0.16823
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11332 0.82 0.747723
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACau---GAC- -5'
8506 5' -44.5 NC_002169.1 + 11445 0.97 0.172958
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11474 0.8 0.845575
Target:  5'- gUCGAUGAAAGCAAAcAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11602 0.9 0.395691
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11604 0.84 0.637731
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11732 0.95 0.209482
Target:  5'- gUCGAUGAAAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCaCAUGAc -5'
8506 5' -44.5 NC_002169.1 + 41928 0.72 0.996881
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUGac -5'
8506 5' -44.5 NC_002169.1 + 42031 1 0.116562
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUGac -5'
8506 5' -44.5 NC_002169.1 + 42032 0.9 0.395691
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.