miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8506 5' -44.5 NC_002169.1 + 71670 0.77 0.942865
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11604 0.84 0.637731
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 10741 0.84 0.648939
Target:  5'- uUCGAcGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11068 0.84 0.648939
Target:  5'- uUCGAcGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 52932 0.84 0.671296
Target:  5'- cUCGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCaCAUGac -5'
8506 5' -44.5 NC_002169.1 + 53156 0.82 0.768645
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 10551 0.81 0.798904
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUa -3'
miRNA:   3'- agCUACUUUCGUUUcUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11474 0.8 0.845575
Target:  5'- gUCGAUGAAAGCAAAcAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 52698 0.77 0.942865
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 119635 0.85 0.61531
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGac -5'
8506 5' -44.5 NC_002169.1 + 105441 0.86 0.570726
Target:  5'- uUCGAcGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUGac -5'
8506 5' -44.5 NC_002169.1 + 42032 0.9 0.395691
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 52815 0.98 0.150456
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAgCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11315 0.97 0.16823
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105236 0.97 0.16823
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 10849 0.94 0.245909
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 119452 0.94 0.245909
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 119354 0.93 0.280148
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -AGCUAcUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 120071 0.92 0.310187
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 104987 0.91 0.334284
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUGCg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.