miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8506 5' -44.5 NC_002169.1 + 80180 0.67 0.999966
Target:  5'- gUCGAUGAcguuguuuauuaAAGCGuuGAUCaUGUGCa- -3'
miRNA:   3'- -AGCUACU------------UUCGUuuCUAGcACAUGac -5'
8506 5' -44.5 NC_002169.1 + 53284 0.89 0.414525
Target:  5'- gUCGAcGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 119580 0.9 0.395691
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105255 1.07 0.048451
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 41928 0.72 0.996881
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUGac -5'
8506 5' -44.5 NC_002169.1 + 10880 0.73 0.992949
Target:  5'- gUCGAaGAucuuggacgAAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- -AGCUaCU---------UUCGUUUCUAGCaCAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105376 0.79 0.88646
Target:  5'- gUCGAcGAucuuggacaaAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- -AGCUaCU----------UUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 53060 0.79 0.878796
Target:  5'- -gGAUGAAAGCAAAGAUgaUGUACUa -3'
miRNA:   3'- agCUACUUUCGUUUCUAgcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11332 0.82 0.747723
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACau---GAC- -5'
8506 5' -44.5 NC_002169.1 + 10679 0.88 0.474163
Target:  5'- gUCGAUGAAAGCAAAGAUCGUuGUGg-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCA-CAUgac -5'
8506 5' -44.5 NC_002169.1 + 104927 0.84 0.660132
Target:  5'- gUCGAcGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGcACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 105115 0.82 0.768645
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 119482 0.7 0.999495
Target:  5'- -gGAcGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCAcAUGac -5'
8506 5' -44.5 NC_002169.1 + 11096 0.85 0.61531
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGac -5'
8506 5' -44.5 NC_002169.1 + 105481 0.7 0.999495
Target:  5'- -gGAcGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- agCUaCUUUCGUUUcUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 118888 0.81 0.798904
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- -AGCUACUUUCGuu--UCUAGC------------ACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 52942 0.85 0.61531
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGac -5'
8506 5' -44.5 NC_002169.1 + 11602 0.9 0.395691
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 129825 0.71 0.998205
Target:  5'- uUCGAcUGAAcgaacGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -AGCU-ACUUu----CGU--UUCUAGCACAUGac -5'
8506 5' -44.5 NC_002169.1 + 11196 0.78 0.907812
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCaCAUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.