miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8506 5' -44.5 NC_002169.1 + 71797 1.11 0.025845
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 105255 1.07 0.048451
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 42158 1.05 0.063253
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- agCUACUUUCGUUUCUAGCACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 119762 1.02 0.089899
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 105532 1.02 0.095272
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 42031 1 0.116562
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUGac -5'
8506 5' -44.5 NC_002169.1 + 52815 0.98 0.150456
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAgCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105236 0.97 0.16823
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11315 0.97 0.16823
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11445 0.97 0.172958
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 11732 0.95 0.209482
Target:  5'- gUCGAUGAAAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCaCAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105569 0.94 0.239492
Target:  5'- -gGAUGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- agCUACUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 42419 0.94 0.245909
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 119452 0.94 0.245909
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 53204 0.94 0.245909
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 10849 0.94 0.245909
Target:  5'- gUCGAUGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 104997 0.94 0.245909
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 42350 0.94 0.252468
Target:  5'- cUCGAUGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105660 0.93 0.25917
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUGu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 52825 0.93 0.280148
Target:  5'- uUCGAUGAAAGCAAAcAUCGUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGCACAUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.