miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8506 5' -44.5 NC_002169.1 + 129825 0.71 0.998205
Target:  5'- uUCGAcUGAAcgaacGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -AGCU-ACUUu----CGU--UUCUAGCACAUGac -5'
8506 5' -44.5 NC_002169.1 + 120199 0.9 0.395691
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 120071 0.92 0.310187
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 119762 1.02 0.089899
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 119635 0.85 0.61531
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGac -5'
8506 5' -44.5 NC_002169.1 + 119580 0.9 0.395691
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 119482 0.7 0.999495
Target:  5'- -gGAcGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCAcAUGac -5'
8506 5' -44.5 NC_002169.1 + 119452 0.94 0.245909
Target:  5'- uUCGAUGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 119354 0.93 0.280148
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -AGCUAcUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 118888 0.81 0.798904
Target:  5'- aUCGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- -AGCUACUUUCGuu--UCUAGC------------ACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 105660 0.93 0.25917
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUGu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGCACAUGAC- -5'
8506 5' -44.5 NC_002169.1 + 105569 0.94 0.239492
Target:  5'- -gGAUGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- agCUACUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105532 1.02 0.095272
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105481 0.7 0.999495
Target:  5'- -gGAcGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- agCUaCUUUCGUUUcUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105441 0.86 0.570726
Target:  5'- uUCGAcGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUGac -5'
8506 5' -44.5 NC_002169.1 + 105376 0.79 0.88646
Target:  5'- gUCGAcGAucuuggacaaAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- -AGCUaCU----------UUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105255 1.07 0.048451
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105236 0.97 0.16823
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGCACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105130 0.75 0.979399
Target:  5'- ----cGAAAGCAAAGAUCaUGUACUa -3'
miRNA:   3'- agcuaCUUUCGUUUCUAGcACAUGAc -5'
8506 5' -44.5 NC_002169.1 + 105115 0.82 0.768645
Target:  5'- -gGAcGAAAGCAAAGAUCaUGUACUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGcACAUGAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.