miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8508 5' -48.1 NC_002169.1 + 9582 0.69 0.993231
Target:  5'- gGAG-ACGa--CGACGACGuCGACGAUg -3'
miRNA:   3'- -UUCaUGCaaaGUUGCUGCuGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 12059 0.81 0.551541
Target:  5'- uGAGgACGa--CGACGACGACGACGACg -3'
miRNA:   3'- -UUCaUGCaaaGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 12405 0.89 0.229994
Target:  5'- aGGGUAUcaUUUCAACGACGACGACGACg -3'
miRNA:   3'- -UUCAUGc-AAAGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 13561 0.69 0.993231
Target:  5'- -uGUGCGUUUgGACGAC-ACGACu-- -3'
miRNA:   3'- uuCAUGCAAAgUUGCUGcUGCUGcug -5'
8508 5' -48.1 NC_002169.1 + 14154 0.7 0.982807
Target:  5'- cAGUcAgGUUgUCGACGACaACGGCGACa -3'
miRNA:   3'- uUCA-UgCAA-AGUUGCUGcUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 15331 0.7 0.982807
Target:  5'- --cUACGa--CAACGACGGCGGCGGu -3'
miRNA:   3'- uucAUGCaaaGUUGCUGCUGCUGCUg -5'
8508 5' -48.1 NC_002169.1 + 15990 0.72 0.951447
Target:  5'- --uUGCGgcagcgUCGGCGGCGgucACGACGACg -3'
miRNA:   3'- uucAUGCaa----AGUUGCUGC---UGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 17073 0.73 0.932008
Target:  5'- ------uUUUCAuaagACGACGACGACGACa -3'
miRNA:   3'- uucaugcAAAGU----UGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 17666 0.66 0.999474
Target:  5'- cGAGUugGUgUUCAAUaauaGCGuCGACGAUa -3'
miRNA:   3'- -UUCAugCA-AAGUUGc---UGCuGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 17917 0.72 0.955652
Target:  5'- uGGaUAC-UUUUA-CGACGACGACGACa -3'
miRNA:   3'- uUC-AUGcAAAGUuGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 18378 0.67 0.998518
Target:  5'- --aUGgGUUaUCGACGugGACuuuGACGACa -3'
miRNA:   3'- uucAUgCAA-AGUUGCugCUG---CUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 18419 0.71 0.972685
Target:  5'- ---gACGUUcacgcaaagccccUCGAgGACGGCGGCGGCc -3'
miRNA:   3'- uucaUGCAA-------------AGUUgCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 19182 0.69 0.989665
Target:  5'- uAGU-CGgucagaUCGACGGCGuCGACGGCu -3'
miRNA:   3'- uUCAuGCaa----AGUUGCUGCuGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 24709 0.8 0.637751
Target:  5'- ---aACGaaUUAACGACGACGACGACg -3'
miRNA:   3'- uucaUGCaaAGUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 25080 0.67 0.997848
Target:  5'- uAGUGuCGauguugUUCAGCG-CGGCGGCGAg -3'
miRNA:   3'- uUCAU-GCa-----AAGUUGCuGCUGCUGCUg -5'
8508 5' -48.1 NC_002169.1 + 25675 0.8 0.616049
Target:  5'- ---aACGguaaCGACGACGACGACGACa -3'
miRNA:   3'- uucaUGCaaa-GUUGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 29808 0.77 0.784488
Target:  5'- -uGU-CGUUaCAagaACGACGACGACGACg -3'
miRNA:   3'- uuCAuGCAAaGU---UGCUGCUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 30476 0.66 0.999003
Target:  5'- ---aACGUgagCGGCGGCGuCGuCGACa -3'
miRNA:   3'- uucaUGCAaa-GUUGCUGCuGCuGCUG- -5'
8508 5' -48.1 NC_002169.1 + 30548 0.69 0.989665
Target:  5'- -uGUACaaGUUUCGuuccaaACGACaACGACGACa -3'
miRNA:   3'- uuCAUG--CAAAGU------UGCUGcUGCUGCUG- -5'
8508 5' -48.1 NC_002169.1 + 32753 0.75 0.8476
Target:  5'- -uGU-CGUUgauugucUUGACGGCGACGACGACg -3'
miRNA:   3'- uuCAuGCAA-------AGUUGCUGCUGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.